SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11261

Length: 1450 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11261

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17451	37/41
SustainPine v2.0	sp_v2.0_unigene60662	3/41

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DAG protein, putative [Arabidopsis thaliana]	-	-	2.0e-40	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	dag protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	64%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	YLP motif	IPR004019	-	0.0	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVN0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 367 aas, putative chimeric sequence, your sequence is shorter than subject: 54 - 525

Fln protein: CPDPQPTREERLIRL*TLAKVVGSEEEAVRIYALSTTTYTGFQAQISEELSEK*

Protein Length: 55

Fln nts: AATGTCCTGATCCTCAGCCCACCCGTGAGGAAAGATTGATACGTTTATAAACCCTAGCGAAGGTGGTCGGAAGTGAAGAGGAAGCTGTAAGGATTTATGCTTTGTCTACAACAACCTATACGGGGTTTCAGGCCCAGATATCAGAGGAACTCTCCGAAAAATGA___AGGGCCTGCCGGGCGTTGTCTGGGTGTTGCCTGATTCATATATTGATCCTGTAAATAAGGAGTATGGAGGAGATAAGTACATCAATGGGGTAATTATACCAGACACTCGGGTATATAATAACAGGTCTAGTGGAAGGTACAATGACAGGCCAAGAAACCGCAATCGCAGAGATTCCATGCCTGTTGAACGAAGAGACCCAATGCCCATGGATGGGAGGGGTGGTATGCAGGGAGATAGGAGAGATTTCAGGCCACCTCTGGAAGGAAGAGGTCCAATGCCAGGTGGTCAACAAGATTACAACAGACCTCAACAAGATTACAACCGACCTCAAGATTACAACAGACCTCCCCCTCAAGGTCCATTTCCAACTGATCGACAGGATTACAACAGGCCGCCTCCACCTCCGCCTATGGAGGGAAGAGGCCCAGTGCCAGGTGGACCTCAAGATTATAACAGGCCTCCTCAAAATTATAACATGTCTCCTCCACAAGATTACAACAGGCCTCCGCAGGATCACAACCGGCCTCCTCCTCAAGATTACACCAGAGTACCGCCTCCACCTACTGAAGGTAGGGGGGCAATGCCAAGTTATCAACAGGATTATAATAGACCTCCTCCTCCCCATATGGATGGACGGGGCCCAATGACGGGTTATCAGCAGGATTATAACAGACCTCCACCTCCGCCTATGGAAGGAAGAGGTCCAATGCCGGGCGATTACAACAGGCCTCTTCCACCCCCACCTATGGAAGGTAGAGGACCAATGCCAGGTGATTACAACAGGCCGCCTCCTCCACCGCCTATGGAAGGGAGGGGGTATCAACAAGATTACTATAGGCACACTCCACCTACCTCTATGCAGGGAGAGAGGCAAGATTATAGGCCACCTATCGATGGAAGAGGTACAATCCCTGGTGATCGACAAGATTATAGGTCAAACATGGACGGAAGAGGTCCCATGCAGGGGGGGCGGAGTGATCACATGCCTCCTAGAGAATCAATGCAGGGAGGATCAACCCCAACCCAAGGCAGGGATTCCGTGCAAGGAGAACAAAAAGAAGCTTTCCCATGGCCAATGGAAGGAGCTCAGTGACAGAACAGCAATGGAATTCGGAGGTGTTGAGAAGGTAATAGGTAAAGTTTGAGTCTGAATAGAGTGAGGAAATCCTTACTTAACGTGTAGCTCAAGCCGCCTTGGTGATTGTTTTTCGGGTTTAAAATTGTCATGCATGGCAAGGTTAATGGAATTTTTGATGGATTTTATTTGACCATGTAAGATTACATT

Fln Alignment:

Contig11261___PDPQPTREERLIR-L*TLAKVVGSEEEAV-RIYALSTTTYTGFQAQISEELSEK
A9NVN0__________________PDPQTTREQKIDTFVKTLANVVGSEEEAKKRIYALSTTTYTGFMCEISEELSEK

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
209	25			75	0.996473
235	20		80		0.995493
236			80	20	0.995493
237	80		20		0.995493
238			80	20	0.995493
310			85	14	0.993533
320			88	11	0.923564
321	88		11		0.923564
322	88			11	0.923564
414	10	90			0.90298
416			90	10	0.90298
418	10	70		10	0.922578
422		88		11	0.923564
635	85			14	0.993533
636	85		14		0.993533
650	12	87			0.992554
651	12	87			0.992554
653		87		12	0.992554
683		62		37	1.0
716	12		87		0.992554
718	87			12	0.992554
768	87	12			0.992554
769		12		75	0.975346
770		12	12	75	0.975346
772		12		87	0.992554
773	87			12	0.992554
774	85			14	0.993533
781	16			83	0.994512
783	16	83			0.994512
785		83		16	0.994512
829			75	25	0.996473
830			75	25	0.996473
1149		33		66	1.0
1265	14		85		0.993533
1266	85			14	0.993533
1267	85		14		0.993533
1268		85		14	0.993533
1277	85		14		0.993533
1287		14		85	0.993533
1288	14		85		0.993533
1296			87	12	0.992554
1307	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain