SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11221

Length: 1241 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11221 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11219	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	putative peroxisomal membrane carrier protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	peroxisomal membrane protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	72%
Blast2go	binding	GO:0005488	Molecular Function	72%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	72%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	72%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P061

Fln msg: your sequence is longer than subject: 334 - 301

Fln protein: MSDALINGLAGAAAGIVAQLITYPLQTVNTRQQTERKLKKALTQDVESISQEQRQKPSGTFHQMCQVIRDEGWGRLYGGLTPSLVGTAASQGVYYYFYQIFRSKAESIALNRKKKGAGDGSVGMLSSLLVAALSGCLNVLLTNPIWVVVTRMQTHTKTQKKITKDGEPLDPITEFPKAAENDIIVPRLTKVHHYGTGHAVQDLYDEYGLLGFWRGVMPTLIMVSNPSIQFMIYESLLKRIRAKRALNKQGLESVTALEIFLLGALAKLGATVVTYPLLVVKSRLQAKQETEAHQYTGTLDAIAKTIRYEGLSGLYKGMSTKIVQSVFAAAILL*

Protein Length: 335

Fln nts: AATGTTGATCACTGATTGACGGGAATTCGTTTTGCTGGCAGTTGACGTCTGTTTTTTGCCTTCCAATATCCGTGCCCAATAGCCAACGTGCCATGCAATGCCTTGACTTAGGATCGAGGCTTGGGGGTGATCATTATAAAACTAAATTAGGAACCGTAAAACTCAAGAACTCGAGGCACTGAATTTGGGGCCTTTTCTTCATATATTCTGTTAATAGACAGA_-_ATGTCTGACGCGCTGATCAATGGCTTGGCTGGTGCCGCGGCAGGGATTGTTGCTCAGCTGATCACATACCCTTTACAAACTGTCAATACAAGACAACAAACTGAGAGGAAACTCAAAAAAGCTTTAACACAGGATGTGGAGAGTATATCACAAGAACAGCGTCAGAAGCCCAGTGGGACCTTTCATCAAATGTGTCAGGTTATAAGGGATGAAGGTTGGGGTAGATTATATGGTGGGCTGACGCCTTCTTTAGTGGGCACTGCAGCATCTCAGGGTGTATATTATTATTTCTATCAAATATTTAGAAGCAAAGCGGAAAGCATTGCACTCAATCGTAAGAAAAAGGGTGCAGGAGATGGGTCAGTTGGAATGCTTTCTTCTCTTCTTGTTGCAGCATTATCTGGGTGTTTAAATGTACTGTTGACAAATCCAATATGGGTTGTCGTTACACGTATGCAGACCCATACAAAGACACAGAAGAAGATAACAAAGGATGGTGAACCTTTAGATCCCATTACCGAGTTTCCAAAAGCTGCTGAAAATGATATAATTGTGCCACGGTTGACGAAAGTTCACCATTATGGAACAGGACATGCGGTGCAAGATCTTTATGATGAATATGGACTTTTGGGATTCTGGAGAGGTGTTATGCCGACACTTATAATGGTGAGCAATCCTTCTATCCAGTTTATGATCTATGAAAGTTTATTGAAGCGCATTAGAGCCAAGCGTGCCTTGAACAAGCAGGGCCTTGAAAGCGTGACTGCATTGGAGATTTTCTTGCTTGGAGCTCTCGCTAAACTTGGAGCAACAGTTGTAACATATCCTTTGTTGGTTGTCAAATCAAGGCTTCAGGCAAAGCAGGAAACAGAAGCACATCAATATACTGGAACTTTGGATGCCATTGCAAAGACAATTCGTTACGAGGGATTATCTGGCCTTTATAAAGGAATGAGCACAAAAATAGTGCAGAGCGTATTTGCAGCTGCAATACTTTTATGA___TTAAAGAGGAGTACATT

Fln Alignment:

Contig11221___TFHQMCQVIRDEGWGRLYGGLTPSLVGTAASQGVYYYFYQIFRSKAESIALNRKKKGAGDGSVGMLSSLLVAALSGCLNVLLTNPIWVVVTRMXXXXXXXXXXXKDGEPLDPITEFPKAAENDIIVPRLTKVHHYGTGHAVQDLYDEYGLLGFWRGVMPTLIMVSNPSIQFMIYESLLK-----RIRAKRALNKQGLESVTALEIFLLGALAKLGATVVTYPLLVVKSRLQAKQETEA-HQYTGTLDAIAKTIRYEGLSGLYKGMSTKIVQSVFAAAI
A9P061__________________TAHALFSIGRAEGLKGLYAGFYPAVLGSSLSWGLYFFFY--------SRAKHRYQKGTEE-HLGPGLHLASAAEAGALVCLFTNPVWLVKTRLQI-------------------QTPGSG---------ARQPYSGFLDALRTILRDEGWRAFYKGLGPSLLLVSHGAIQFTTYEEARKFVITLRNKQRKDDNIVGDKALTSVDYAALGALSKFFAALLTYPYQVIRARVQQRPNTDGLPKYRDSYHAFKETLRFEGIRGLYKGIGPNLLKNVPASSI

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
163	20			80	0.995493
164	20			80	0.995493
204	12			87	0.992554
206		87		12	0.992554
207	87		12		0.992554
208	87			12	0.992554
209		87		12	0.992554
743	75		25		0.996473
827		80		20	0.995493
828		80	20		0.995493
886	20			80	0.995493
887	20	80			0.995493
888		80		20	0.995493
889	80		20		0.995493
890		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain