SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11188

Length: 1099 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11188 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3005	13/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial transcription termination factor-like [Oryza sativa Japonica Group]	-	-	1.0e-25	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	protein	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	54%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A816

Fln msg: Separated hits, possible frame ERROR between 460 and 466, Distance to subject end: 61 aas, your sequence is shorter than subject: 300 - 355

Fln protein: MLSVQLKVWKPLLTNNLSSHRQLIFPLPLPLPFTSIARITFFNFCSRNALSSTTPPHRGLVTDFLINQCGLSEEEITKAFRHRTEFxxxKSSRTSEEILELLNGYGFTTPAQIRKVVLSNPRFFFRDAKNSIQSKLILLGSYMKEEDICKLMCTDSSFLSCSEERIKSSILLIQKLGVEGETLSKLLARQPLLLSYSSERVIESFKLAEDLGLNKGSKMFVAVMRSILGVSKENAERKLQCLSSVGFSQKQASEIFKRWPFLFGLSEEKVRNQGDFLVKYMGIPYNNIVKNPALISYSLE

Protein Length: 301

Fln nts: GGTTTATATAAATGACCTGAATCGCACTGGAACACCAGGGTGAAACCCTAATCAGGAATCCTGGCATCCAATATTGTTGCCTTGCTGCCGTTCCGCAGCTTTGAGCTATAGGTGTTCACAGATCGATTCTCGCGGTGTCTGTCGCTGGTAAGTTAACTACTCATCTGCGAGACATTTTGTTATATCAATAACATAGACT_-_ATGCTTTCTGTTCAGTTGAAGGTATGGAAACCCCTGTTAACCAACAACCTGTCATCCCATCGCCAATTAATTTTCCCACTGCCACTGCCACTGCCATTCACCTCAATAGCCCGCATAACATTCTTCAATTTCTGCTCCCGAAACGCACTCTCATCTACAACTCCACCACACAGGGGTCTTGTCACAGATTTTCTCATCAACCAATGCGGTTTATCTGAGGAAGAAATTACAAAAGCCTTTAGACATCGCACTGAGTTTCTxxxxxxCAAATCCAGCCGGACTTCAGAAGAAATTTTGGAGCTATTAAATGGGTATGGTTTCACTACCCCTGCCCAGATTCGAAAGGTGGTTCTTTCCAATCCTCGGTTCTTTTTTCGCGATGCCAAAAATAGCATACAGTCCAAACTCATCCTCCTTGGGTCTTACATGAAAGAAGAGGATATATGTAAACTCATGTGTACTGATTCAAGTTTTTTAAGTTGCAGTGAAGAAAGGATTAAATCTTCGATTTTACTGATACAAAAATTGGGTGTTGAGGGTGAAACATTATCAAAATTATTGGCCAGACAACCCCTTTTGCTCTCATATTCATCTGAAAGGGTCATAGAATCATTTAAACTGGCCGAAGATTTGGGGCTCAACAAGGGATCCAAGATGTTTGTAGCTGTTATGCGTTCTATTTTGGGAGTAAGTAAAGAAAACGCAGAAAGAAAATTGCAGTGCTTGAGCAGTGTAGGTTTCTCACAAAAACAAGCTTCAGAAATATTCAAACGGTGGCCGTTTCTTTTTGGGTTGTCAGAGGAAAAGGTGAGGAATCAGGGGGATTTTCTGGTCAAATATATGGGTATTCCATACAATAATATTGTTAAGAATCCAGCTCTGATCAGCTACAGTTTGGAGA

Fln Alignment:

Contig11188___LKVWKPLLTNNLSSHRQXXXXXXXXXXFTSIARITFFNFCSRNALSSTTPPHRGLVTDFLINQCGLSEEEITKAFRHRTEFLxxKSSRTSEEILELLNGYGFTTPAQIRKVVLSNPRFFFRDAKNSIQSKLILLGSYMKEEDICKLMCTDSSFLSCSEERIKSSILLIQKLGVEGETLSKLLARQPLLLSYSSERVIESFKLAEDLGLNKGSKMFVAVMRSILGVSKENAERKLQCLSSVGFSQKQASEIFKRWPFLFGLSEEKVRNQGDFLVKYMGIPYNNIVKNPALISYSLE
D5A816__________________MTIWKRVITNQFPLSKAMLPLALEF---TVKSHITCPNFCTQISAASTTPPDRGVYIEFFNSNCGLTPEEIAKAFRYNKEVIxxKSTQNFKEVLELLKGCGLTTPAQIRRVVLNNPKFFCPRAERNIQSKLGLLRTVMKEEDIGKLVISHGRIFHYRENKLKSAISLLQKLCGEGQALSELIATQPRLLMVSEETVLESFKQAEDLGCQKGSKMFACVMRGILGTGKEQLERRLQCLSSC-FSEKQVLELLRRWPLILGYSEENVKHRVDFLVKSLGFPLDYLVKYPALFGYSLE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
234	60		40		1.0
263		40	60		1.0
303		60		40	1.0
310		25	75		0.996473
311	75		25		0.996473
313			75	25	0.996473
364	33	66			0.997452
365		66		33	0.997452
366		66	33		0.997452
409		80	20		0.995493
424		80	20		0.995493
431	20			80	0.995493
440		20		80	0.995493
451			80	20	0.995493
457	80		20		0.995493
459	20		80		0.995493
483	80			20	0.995493
494	20		80		0.995493
501	20			80	0.995493
514		33		66	0.997452
516	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
805	825	TGGCAG TGGCAG TGGCAG TGG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain