SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11163

Length: 1348 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11163 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15324	37/39
SustainPine v2.0	sp_v2.0_unigene60298	1/39
SustainPine v2.0	sp_v2.0_unigene62556	1/39

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S0D8_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	ring finger and chy zinc finger domain-containing protein 1-like	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MEVECCSPRSSAQGCEIDLKPTMVVEDTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQTRGGPSASSCRSHL*

Protein Length: 296

Fln nts: AATGTCCCATTGGAGCGGTATATTGTTTTGTTAATTTTGTTCTGTTAGGTACATTGTGAGAAAGCAGAGATTTGAAGGGGATTTGAATTTGAATC_-_ATGGAAGTTGAGTGCTGCAGCCCTCGGTCTTCTGCTCAGGGGTGTGAAATTGACCTCAAGCCAACGATGGTGGTGGAAGATACGCTTAATCAAGGATGCATGCAATATGGATGTTCACACTACCGCCGGAGATGCCAAATAAGGGCTCCGTGTTGTAATGAAGTCTTTGACTGTAGGCATTGTCATAATGAGGCCAAAAATTCAATGGATGTCCATCCACTTGACAGACATGATGTACCACGCCATGAAGTTCGAAAGGTTATCTGTTCACTTTGTAGAACTGAACAAGATGTTCAGCAAACCTGCGTTACTTGTGGTGTTTGTATGGGAAAGTACTTTTGTGAAAAATGCAATTTTTTTGATGACGAGGACTCAAAACAGCAATACCACTGTGATGGATGTGGAATTTGCAGAACTGGTGGCAACGATAATTTCTTCCACTGTTATAAATGTGGATGTTGCTATTCTATACAATTGAAGGATTGCCACCCTTGTGTGGAAAAAGCAATGCACCACAACTGCCCTGTGTGTTTCGAGTATTTATTCGACTCTACAAAGCTTATCAGCGTATTGCCTTGTGGTCACACTATTCACATGCATTGCTTGAAAGAGATGCACGAGCATCTTCAATTTGCTTGTCCAGTGTGCTCCAAATCTGTCTGTGATATGTCTAAATTATGGGAGAAACTTGACCGAGAGGTTGCTTTGACTCCAATGCCTGAAGCTTACCAGCACAAAATGGTTTGGATCTTATGCAATGACTGTGGAGTAACTTCTGAAGTAAATTTTCACATTGTTGCACACAAGTGTCAAAGTTGCAATTCTTATAACACCCGGCAGACCAGGGGAGGTCCTTCTGCAAGTTCATGTAGATCGCATCTTTGA___TATTCAAGTTGCAATTCTTATAACACCCGGCAGACCAGGGGAGGTCCTTCTGCAAGTTCATGTAGATCGCATCTTTGATATTCTCAATGTTCAGATTCATGTATCCCTCTTTGCCACTTGTAAGGTTGTTTTAGCACTGCTTATGTGGCATGAAAAACAGCTGTACTGCAAATTGCTATGCAGTGGCATTACTGTAAGAATTCATTGCATTGTAACCGCTGAGTTCTTGTGGCACTACTCTACGGTTGTTAACATCATAATAGAGTTGATGCTCTGTGCCCATTTCAACAAAGACCACAAGAAGGGAATTTTTTTATCCTGCAGCTCTCACGCCACGACAAAACGAGTACAAATTCTGTCTCTACATT

Fln Alignment:

Contig11163___DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQTRG
D5A9X0__________________DRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK-DPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRG

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
109	66		33		0.997452
111	25			75	0.996473
139	20	80			0.995493
141		80	20		0.995493
142	80			20	0.995493
204	14		85		0.993533
206	85		14		0.993533
207		85		14	0.993533
267	16			83	0.994512
269		83		16	0.994512
270	83		16		0.994512
361	85			14	0.993533
362	71	14		14	0.984337
363	11	88			0.923564
572	14	85			0.993533
573	14			85	0.993533
574		85		14	0.993533
575		85	14		0.993533
576		85		14	0.993533
582			10	90	0.90298
628	10		90		0.90298
637	12	87			0.992554
638	12		87		0.992554
1052	20			80	0.995493
1053		20	80		0.995493
1055	80			20	0.995493
1077	75			25	0.996473
1203	20		80		0.995493
1207	80			20	0.995493
1305		25		75	0.996473
1307	66		33		0.997452
1309	33	66			0.997452
1313	66			33	0.997452
1315	66	33			0.997452
1316	33	33	33		0.997753
1317	33	33	33		0.997753
1318	33	33		33	0.997753
1319	33			66	0.997452
1320			33	66	0.997452
1321	66	33			0.997452
1322	66			33	0.997452
1323		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain