SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11162

Length: 741 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11162 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6486	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Ginkgo biloba RepID=Q0R5D7_GINBI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	2-c-methyl-d-erythritol 4-phosphate cytidyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.7.6-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	85%
Blast2go	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	85%
Blast2go	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	GO:0050518	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
387		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain