SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11158

Length: 952 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11158

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11586	12/16
SustainPine v2.0	sp_v2.0_unigene36148	3/16

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 10, SmABCI10 n=2 Tax=Selaginella moellendorffii RepID=D8QQK4_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	trigalactosyldiacylglycerol 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	87%
Blast2go	lipid transporter activity	GO:0005319	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	87%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Permease domain	IPR003453	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM7

Fln msg: Overlapping hits, possible frame ERROR between 560 and 506, Distance to subject end: 86 aas, your sequence is shorter than subject: 317 - 462

Fln protein: IGTEIGFCGPLRPSFSGKVDLVINPLPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKGLAASNRQFYLNSYPLNLASKAREVHAMQHTFPHGNTVLKLKQHVCRGKALAAIDESVCHPQHKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARxxxxxxxxxxxxxxxxxxxxGSTGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTAIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVLACCLALPILTLICFSVSIAASVLLADGVYNVSDI

Protein Length: 318

Fln nts: GAATTGGGACTGAAATTGGCTTCTGTGGCCCCTTACGGCCGTCGTTCTCTGGTAAGGTCGATCTGGTAATAAATCCTTTACCGGGGTTTTATTCCGGTTGTGGTCTGCGAAGCCCTAATGGCATGGGTTTCAAAGGAATGAGGTCAGGTTTTGTACCTGGGCGATTTTGGCTAAATAGCTACTCCATTAAAGGGTTGGCTGCAAGTAACCGGCAATTTTACCTGAATAGCTATCCTCTAAACCTGGCATCTAAGGCTAGGGAAGTCCATGCCATGCAGCACACATTTCCACATGGAAATACGGTACTTAAACTAAAACAGCATGTCTGCAGGGGTAAAGCTTTGGCAGCAATTGATGAATCTGTTTGCCATCCACAACATAAGGAATCTGGAGATTTTGTAGATCAAGATGTAGGGAGTTCAATTCTGCAGGGCTGGACACCACCCAGATATGTGTGGAGAGCTCTGGCCGCGTGGATGATAGCAGGTCAGGTGATTGCCAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGTTCCACTGGAGTTTGCTTGCTGACAGCTGCATTTGTGGGGATGGCTTTCACCATTCAATTTGTGAGGGAGTTTACTAGACTGGGCTTGACTAGATCGGTTGGAGGAGTGTTGGCTCTCGCTTTCTCGCGGGAGCTCAGCCCGGTTGTTACAGCTATCATCATTGCAGGCCGAGTTGGCAGTGCGTTTGCTGCAGAGTTGGGCACTATGCAGGTATCTGAACAGACTGATACATTGAGGGTGCTGGGAACAGATCCTGTGGATTACCTTATAATTCCACGGGTTTTGGCGTGTTGTTTGGCTTTGCCAATTTTGACCTTGATCTGCTTCAGTGTATCCATAGCTGCTAGTGTTTTGTTGGCTGATGGAGTCTACAATGTAAGTGACATT

Fln Alignment:

Contig11158___TEIGFCGPLRPSFSGKVDLVINPLPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKG--LAASNRQFYLNSYPLNLASKAREVHAMQHTFPHGNTVLKLKQHVCRGKALAAIDESVCHPQHKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARVxxxxxxxxxxxxxxxxxxPGSTGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTAIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVLACCLALPILTLICFSVSIAASVLLADGVYNVS
A9NXM7__________________TENGFCGPMRRSFSGEVDRVLNSLPGFYSGCGLRSPNGMGFKGTRSGFAPGRLWPDSYSIKGMRLAAIPRRFYPFSYPLNLTSKPKEVHAMQHTFPNGNIVLKIKHFICRGKASAGIDDSVFHLQGKESGGFVDQEVVGSILKGWTPPRYVWRALAAWVIAGQVIARVxxxxxxxxxxxxxxxxxxPGSSGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTSIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVIACCLALPILTLICFSVSLAASVLLADGVYNVS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
240	80	20			0.995493
251			20	80	0.995493
271		50		50	1.0
279	33	66			1.0
320			60	40	1.0
324	20		80		0.995493
325		20		80	0.995493
326	20	80			0.995493
328			80	20	0.995493
329	20	80			0.995493
333			80	20	0.995493
340			80	20	0.995493
354			12	87	0.992554
355			87	12	0.992554
378	87			12	0.992554
379		87		12	0.992554
380	85		14		0.993533
412		28	71		1.0
435	42	57			1.0
505	16		83		0.994512
506		20		80	0.995493
507	20			80	0.995493
510	66	33			0.997452
519	66	33			0.997452
522		66		33	0.997452
805		33	66		0.997452
806	33		66		0.997452
808			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain