SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11155

Length: 1033 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11155 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4036	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Calreticulin n=4 Tax=BEP clade RepID=B1NF32_WHEAT	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein loc100273288 precursor	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	92%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	92%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	92%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	92%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-
Sma3	Calreticulin	IPR009169	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRK0

Fln msg: Overlapping hits, possible frame ERROR between 588 and 579, your sequence is shorter than subject: 300 - 426

Fln protein: SGDTPYSVMFGPDICGTDKKKLHVIVSYQGQNYPIKKDLVCETDKLTHVYTLIIRPDASYSILIDNREREFGSLYTDWDILPPRKIRDLKAKKPKDWDDREYIDDPDATKPEGYDNIPAEIPDPKAKKPDDWEEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYxxxxxWQVKAGSVYDNILVCDDPQYAREVAEETWGRNREMEKEAFEEAEKKRRAEEEEEAERARQEGERRRRERDHDRRYHDKDRMRERLRRRHQPHDDYNDYHDEL*

Protein Length: 301

Fln nts: AGTGGAGACACTCCGTACAGTGTAATGTTTGGTCCCGATATCTGTGGCACAGACAAAAAGAAGCTCCATGTCATAGTATCATATCAAGGTCAGAATTATCCGATAAAGAAAGATCTTGTCTGTGAAACAGACAAGCTTACTCATGTTTACACTTTAATTATAAGACCGGACGCATCCTACAGCATACTAATTGACAATAGAGAAAGGGAATTTGGAAGCCTCTATACTGATTGGGATATTCTTCCACCTCGAAAAATCAGAGATTTGAAGGCCAAAAAGCCTAAAGATTGGGATGATAGAGAGTATATTGATGATCCTGATGCCACAAAACCAGAGGGCTACGATAATATTCCAGCAGAAATACCAGATCCAAAGGCAAAAAAGCCTGATGACTGGGAGGAGGAAGATGATGGGATATGGAAAGCACCAAAGATCCCCAATCCAGCATACAAGGGGCCTTGGAAGGCGAAGAAAATTAAAAATCCCAACTACAAGGGGAAGTGGAAAACTCCATGGGTTGACAATCCAGAATTTGAAGATGATCCAGATCTTTATGTCTTCAAGCCTTTGAAATATxxxxxxxxxxxxxxxTGGCAGGTGAAGGCAGGCTCGGTTTATGACAACATTTTAGTGTGTGATGATCCTCAGTATGCTCGGGAGGTTGCTGAGGAGACATGGGGAAGAAACAGGGAGATGGAAAAGGAAGCTTTTGAGGAGGCAGAGAAAAAGAGGCGCGCTGAAGAGGAAGAGGAAGCGGAACGGGCAAGACAAGAAGGGGAGCGCAGGAGACGTGAGCGGGATCATGATAGGAGATACCATGATAAAGACCGCATGAGAGAACGACTTCGAAGGAGACACCAACCGCATGACGACTACAATGATTACCATGATGAACTGTGAGACGTCCCTCAACAGCAATTAAACTGCAATCCAACATGAAGAACATCTTTATATATTCACTAAGAAGGGCACAATGCCCTTTTTTGCAATTTTCTTCTAATCTAGTATATTTTGTTTGTGCATGCAAATACATT

Fln Alignment:

Contig11155___SGDTPYSVMFGPDICGTDKKKLHVIVSYQGQNYPIKKDLVCETDKLTHVYTLIIRPDASYSILIDNREREFGSLYTDWDILPPRKIRDLKAKKPKDWDDREYIDDPDATKPEGYDNIPAEIPDPKAKKPDDWEEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVxxxVWQVKAGSVYDNILVCDDPQYAREVAEETWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHQPHDDYNDYHDEL
B8LRK0__________________SADTPYSVMFGPDICGTDKKKLHVIISYQGQNYPIKKDLTCETDKLTHVYTLIIRPDASYSILIDNREREYGSLYTDWDILPPRKIKDFKAKKPKDWDDREYIDDPDATKPEGYDYIPAEIPDPKAKKPDDWDEEDDGIWKAPKIPNPAYKGPWKAKKIKNPNYKGKWKTPWVDNPEFEDDPNLYVFKPLKYVxxxVWQVKAGSVYDNVLVCDDPEYAQEVAEETWGRNREMEKEAFEEAEKKRRAEEEEEAERARQEGERRRRDRDRDRRYHDKDRMRERLRRRHRPHDDYDDYHDEL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
487	33			66	0.997452
488	33	66			0.997452
491			66	33	0.997452
677	33			66	0.997452
678	33	66			0.997452
767		75		25	0.996473
800	83		16		0.994512
901	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain