SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11137

Length: 1605 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11137 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3978	168/169

Source	Descriptions	Term	Type	Identity
AutoFact	Abietadienol/abietadienal oxidase n=1 Tax=Pinus taeda RepID=C72B1_PINTA	-	-	94%
FL-Next	sp=Abietadienol/abietadienal oxidase; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	c72b1_pinta ame: full=abietadienol abietadienal oxidase short= ame: full=cytochrome p450 720b1 ame: full=cytochrome p450 cypa	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	heme binding	GO:0020037	Molecular Function	85%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	85%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK6

Fln msg: Overlapping hits, possible frame ERROR between 1247 and 1244,

Fln protein: MADQISLLLVVFTAAVALLHLIYRWWNAQRGQRKTNNEKNQEVHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDIFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEITLQHECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKAREVLIKKISNMIKERRDHPHIVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFxxxTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELTLFLHIFITRFRWEALADEHPSYFPLPYFAKGFPVRLYNRE*

Protein Length: 483

Fln nts: CGGGAATCGAGCACCATAAAGAGCCCACCAGGGGTAAAAGTTCTCCAGCATCAGAACCAATATCCACTGATAGGATTAACGAGGCGACA_-_ATGGCAGACCAAATATCATTACTGTTGGTGGTGTTCACCGCAGCGGTGGCGCTCCTCCACCTTATTTACAGGTGGTGGAATGCCCAGAGAGGCCAGAGAAAGACTAATAATGAGAAGAATCAGGAGGTCCATCTGCCTCCTGGTTCGACAGGATGGCCGCTGATTGGCGAAACCTACAGTTATTATCGCTCCATGACCAGCAATCGTCCCAGACAATTCATCGACGACAGAGAGAAAAGATACGATTCGGACATTTTCGTATCTCATTTATTTGGAAGCCAAGCAGTTATATCATCGGATCCCCAGTTCAACAAGTATGTTCTGCAAAACGAGGGGAGGTTTTTTCAAGCTCATTACCCAAAGGCACTGAAAGCTTTGATAGGCGATTACGGGCTGCTCTCGGTGCATGGCGATCTGCAGAGGAAGCTCCATGGAATAGCGGTGAATTTGCTGAGGTTTGAGAGGCTGAAATTCGATTTCATGGAGGAAATCCAGAATCTAGTTCACTCCACGCTGGATAGATGGGTAGACAAGAAGGAAATTACTTTGCAGCATGAATGTCACCAGATGGTTCTCAACTTGATGGCCAAACAACTGCTCGATTTATCTCCTTCCAAAGAGACAAATGAGATTTGCGAGCTATTCGTGGACTATACCAATGCAGTGATCGCCATTCCCATCAAAATTCCTGGTTCTACTTATGCGAAGGGACTCAAGGCAAGGGAGGTCCTCATAAAAAAGATTTCCAACATGATAAAAGAGAGAAGGGATCATCCTCATATTGTTCACAAAGATTTGTTAACTAAACTTTTGGAAGAAGACTCTATTTCTGATGAAATTATTTGTGATTTTATATTATTCTTGCTCTTTGCTGGACATGAGACTTCTTCTAGAGCCATGACATTTGCTATCAAGTTTCTCACAACTTGTCCCAAAGCATTGACTCAAATGAAAGAAGAACATGATGCTATATTAAAAGCCAAAGGCGGTCATAAGAAATTGGAGTGGGATGATTATAAATCAATGAAATTCACTCAATGTGTTATAAATGAAACACTTCGACTAGGTAACTTTGGCCCTGGGGTGTTTAGAGAAACTAAAGAAGACACTAAAGTGAAAGATTGTCTCATTCCAAAAGGATGGGTGGTCTTTxxxxxxxxxACTGCAACCCATCTAGATGAAAAGTTCCACAATGAAGCTCTTACATTTAACCCATGGAGATGGGAATTGGATCAAGATGTATCGAATAATCACTTATTTTCACCTTTTGGAGGGGGAGCTAGGCTTTGTCCAGGGTCCCATCTCGCTAGGCTTGAATTGACACTTTTCCTTCACATATTTATCACAAGATTCAGATGGGAAGCACTTGCTGATGAACATCCCTCATATTTTCCATTACCTTATTTTGCTAAAGGCTTTCCTGTGCGCCTTTATAACAGAGAATGA___AGAAATAATTTGTTTATTTTGATGTAATACTTATAAATAAACATAACTTTAAATTAGCGAATATACTAGCT

Fln Alignment:

Contig11137___MADQISXXXXXXXXXXXXXXLIYRWWNAQRGQRKTNNEKNQEVHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDIFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEITLQHECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKAREVLIKKISNMIKERRDHPHIVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFAxLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELTLFLHIFITRFRWEALADEHPSYFPLPYFAKGFPVRLYNRE
Q50EK6__________________MADQISLLLVVFTAAVALLHLIYRWWNAQRGQKRTSNEKNQELHLPPGSTGWPLIGETYSYYRSMTSNRPRQFIDDREKRYDSDVFVSHLFGSQAVISSDPQFNKYVLQNEGRFFQAHYPKALKALIGDYGLLSVHGDLQRKLHGIAVNLLRFERLKFDFMEEIQNLVHSTLDRWVDKKEIALQNECHQMVLNLMAKQLLDLSPSKETNEICELFVDYTNAVIAIPIKIPGSTYAKGLKARELLIRKISNMIKERRDHPHIVHKDLLTKLLEEDSISDEIICDFILFLLFAGHETSSRAMTFAIKFLTTCPKALTQMKEEHDAILKAKGGHKKLEWDDYKSMKFTQCVINETLRLGNFGPGVFRETKEDTKVKDCLIPKGWVVFAxLTATHLDEKFHNEALTFNPWRWELDQDVSNNHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRWEALADEHPSYFPLPYLAKGFPMRLYNRE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
102	40		60		1.0
104	40	60			1.0
165	16		83		0.994512
166	83	16			0.994512
169		83		16	0.994512
874	12	87			0.992554
894	10			90	0.90298
895	10			90	0.90298
909			83	16	0.999991
923	4	76		19	1.0
1021	2		93		0.970804
1115	4	95			0.99692
1117		95	4		0.997218
1153			94	5	0.998894
1204	88			11	0.923564
1466		11	88		0.999952
1468			88	11	0.999952
1469		88		11	0.999952
1489		85		14	0.999981
1490		85		14	0.999981
1512	20			80	0.999996
1516			80	20	0.999996
1548		25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain