SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11127

Length: 979 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11127

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28798	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted unusual protein kinase (ISS) [Ostreococcus tauri] emb\|CAL50461.1\| Predicted unusual protein kinase (ISS) [Ostreococcus tauri]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	uncharacterized aarf domain-containing protein kinase chloroplastic-like	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLY2

Fln msg: Distance to subject end: 158 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 326 - 442

Fln protein: FRTLASFLNGISLEKLGCNAELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPRVYKELSGSRVLVMEWIDGIRCTDPQAIKEVGIRIPDFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVTPIIPALEAIWQNSVGKGLADFNFRIVTEKFNKLVYQYPIRIPERFSLVIRSLLTQEGICFTLQPDFKFLEVAYPYVAKRLLTDPDPALRERLIQVLFKDGVFQWKRLENLIILAKEQVAIMSRNPALQEASRQDTGNRRVDI

Protein Length: 327

Fln nts: TTTTCGAACTCTAGCTTCATTTCTGAATGGCATTAGTCTTGAGAAGCTTGGTTGTAATGCGGAGCTTATTGTTGATGAATTTGGCGAGAAGCTACTTGAAGAGCTTGACTATACACTTGAGGCACGTAACATTGAGGACTTCTTGGAGAACTTCAAAGATGATCCAACAGTTAAGATTCCTCGAGTATACAAAGAACTTTCTGGTTCACGGGTTCTTGTGATGGAATGGATTGATGGCATCCGTTGCACTGATCCACAAGCTATTAAAGAAGTTGGCATCCGCATACCTGATTTTCTCACTGTTGGTGTGAGTGCTGCTCTGAGACAGCTGCTAGAATTTGGGTTGTTTCATGGAGATCCACATCCTGGGAACATCTTTGCCATGCGTGATGGACGTATTGCATATGTAGACTTTGGAAATGTTGCAGTTCTTAGTCAGCAAAACAAACAAATCCTGATTGATGCAGTGGTACATGCTGTGAATGAGGACTATGCGGAGATGGCAAATGATTTTACAAGACTGGGTTTCCTTGCTCCTGGCACTGACGTAACTCCTATTATTCCAGCATTAGAAGCAATATGGCAGAACTCAGTTGGGAAAGGACTCGCTGATTTTAATTTTAGGATCGTCACTGAGAAATTTAACAAACTTGTATACCAGTATCCAATCCGTATTCCTGAAAGGTTTTCTCTTGTTATTCGATCATTATTGACTCAAGAAGGAATTTGTTTCACTCTTCAACCAGACTTCAAGTTTCTTGAGGTAGCTTACCCATATGTGGCGAAACGTCTCCTGACAGACCCAGATCCAGCATTACGAGAGCGCCTCATTCAGGTGCTTTTTAAAGACGGAGTATTTCAATGGAAACGCTTAGAAAATCTGATTATATTGGCTAAGGAACAGGTAGCCATTATGAGTCGGAATCCAGCACTGCAAGAAGCAAGCAGACAAGATACAGGAAATCGGCGAGTTGACATT

Fln Alignment:

Contig11127___LDYTLEARNIEDFLENFKDDPTVKIPRVYKELSGSRVLVMEWIDGIRCTDPQAIKEVGIRIPDFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVTPIIPALEAIWQNSVGKGLADFNFRIVTEKFNKLVYQYPIRIPERFSLVIRSLLTQEGICFTLQPDFKFLEVAYPYVAKRLLTDPDPALRERLIQVLFKDGVFQWKRLENLI
B8LLY2__________________MDYEAEAQNGLKFRKLFGQLPEVVIPEMYLDISSRRVLIMEWVEGQKLSE---VKDLHL-----VEVGLYCSLTQLLESGFYHADPHPGNLLRTYDGKLAYIDFGMMGEFKQDFRDGLIEACLHLVNREFDALAGDFVTLGLLPPTAQMSDVANALTGVFQNAVTKGIQNISFGDLSGNLGRTMYKFKFQIPSYFSLVIRSLAVLEGLALSSDPNYKVLGSSYPWIARKVLTDSSPQLRSTLQALLYKDGTFRIDRLESLI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
377	20			80	0.995493
392	25		75		0.996473
393			75	25	0.996473
399	20			80	0.995493
402		75		25	0.996473
467	33		66		0.997452
514	33			66	0.997452
748			83	16	0.994512
749	83			16	0.994512
827	25		75		0.996473
829	25	75			0.996473
831		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain