SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11123

Length: 795 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11123 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10824	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Putative monosaccharide transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TBL1_VITVI	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	sugar transporter	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
712	20			80	0.995493
713	80	20			0.995493
715	80			20	0.995493
716			50	25	0.995533
719	33			66	0.997452
720			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain