SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11116

Length: 966 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11116

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6696	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	transducin wd40 domain-containing protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8E8

Fln msg: Separated hits, possible frame ERROR between 702 and 704, and possible frame ERROR between 745 and 747, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 219 - 264

Fln protein: MLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALxxVSSGADENVGSINx*KIRANDPNVQISPRNRPNASTIRSTVEEALEDITDLFYDEERNEIYTGNWHGLVHVWSN*

Protein Length: 220

Fln nts: AATGTATATGCCTCGGATAATTTCAGTTCACTGAAATGCAGAACAACACCCATTGAGTATATCCGGAGGGGTCAACCAGATGCAGGCTTTGCCTTATTCGAGTCCGAGTCATTGAAATGGCCTGGTTTTGTAGAGTTTGATGATGTGAACGGAAAAGTTCTCACCTACTCTGCCCAGGATGGCATCTATAAGGTGTTCGACTTAAAGAACTACACATTATTGTATTCAATATCAGATGAACATGTTCAAGAGATAAAGATCAGCCCAGGGATAATGTTACTAATATTCGACAGGGCCAGTGGGCATGTTCCGTTAAAAATTCTATCTATAGAGGATGGCACTGTTTTAAAAGCATTTAATCACCTATTGCATCGCAATAAGAAGGTTGACTTTATTGAGCAGTTCAATGAGAAACTTCTCGTAAAACAAGAAAATGAGAACCTACAAATACTGGATGTTCGCAATACGCAATTGACTGAAGTAAGCAGGGCAGAGTTCTTGACTCCATCGGCATTTATCTTTCTATATGAGAATCAGTTATTCCTGACATTCCGCAATCGTACAGTGGCTGTATGGAATTTCAGAGGGGAGCTGGTTACCTCATTTGAGGACCACTTGCTATGGCATCCTGATTGCAATACAAATAACATTTATATTACTAGTGATCAAGATTTGATTATTTCTTACTGCAAGGCACTTCCxxxCGTTTCTTCTGGAGCAGACGAAAATGTTGGTTCTATAAATxxxTAAAAGATTCGTGCGAATGATCCAAATGTTCAGATTAGTCCTAGAAATCGCCCAAATGCCTCTACAATCAGAAGTACTGTAGAAGAAGCACTTGAAGACATCACTGACTTATTCTACGATGAAGAGCGGAATGAAATATATACTGGCAATTGGCATGGCTTGGTTCATGTCTGGTCTAACTGATTAATGTCTGTATGTTGTGCATACCCAGTCAATCAACATT

Fln Alignment:

Contig11116___SPGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPxVSSGADENVGSINIxKIRANDPNVQISPRNRPNASTIRSTVEEALEDITDLFYDEERNEIYTGNWHGLVHVWSN
D5A8E8__________________SSGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPxLSSGAEENVGSINIxKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFYDEERNEIYTGNWHGLVHVWSN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
854	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain