SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11114

Length: 1191 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11114

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22406	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	monosaccharide transporter 4 [Oryza sativa Japonica Group]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	hexose transporter	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	high-affinity hydrogen:glucose symporter activity	GO:0005358	Molecular Function	0.0	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg: your sequence is shorter than subject: 277 - 529

Fln protein: NVNELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALLLEAGVQMFVSQVIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMTDRVWKKHWLWKRFVTDADLIDDDDEDVYSKKENGKGDAKAYNNSQL*

Protein Length: 278

Fln nts: AATGTCAATGAACTAGTCGAGGCTAGTAGAATAGCGGCGACAGTGAAGCATCCATTCCGAAACCTTTTGAAGCGCAGGAATAGGCCTCAGCTTGTCATTACCTTTTTTCTGCAGCTCTTCCAGCAGTGTACCGGTATCAATGCCATTATGTTTTATGCTCCTGTGCTCTTCCAGACCTTGGGATTCAAGAACGATGCTTCACTTTACTCTGCCGTTATTACTGGAGCCGTCAATGTATTATCAACTGTTATATCTATCTATGCGGTCGATAAAGTCGGTAGAAGAGCGCTTCTTCTCGAAGCAGGAGTACAGATGTTCGTCTCACAGGTCATTATTGCAATCCTTCTGGCAACAGGTATGAAGGACGAGTCAAAACTTCCTCACGGCACGGCCATTGTAATAGTGTTGCTGATTTGCGTTTTCGTATCATCCTTTGCCTGGTCATGGGGACCACTGGGATGGCTGATTCCCAGCGAAACCTTTCCCCTGGAAACAAGGTCTGCTGGACAGAGTGTGACCGTCTGCGTGAATCTCCTGTTCACTTTTGTGATTGCACAGGCCTTCTTGTCAATGCTTTGCCATTTCAAATACGGGATCTTTTTGTTCTTTGCCAGCTGGGTGTTGGTTATGTCCGTATTTGTGTTGTTTCTCCTTCCAGAGACGAAGAATATCCCAATTGAAGAGATGACAGACAGAGTCTGGAAGAAACATTGGCTGTGGAAGAGATTTGTCACAGATGCCGACCTCATTGACGACGATGACGAAGATGTTTATTCCAAGAAAGAAAATGGTAAAGGCGATGCCAAAGCCTATAATAATTCCCAGTTGTGA___TCTTTCTCCATCCCATTTCATCAGTTATGATCTTTGTCCATCCCATTTCATCACAGCGAGAATCACAGATCCATCCACCCCACCACACAGTTAACCGTCAGGTCACCTCTGGCGCAGCATCATAGGCGCGTAACAAAATTTTAACTACCGCTTATTACTCGCAAGATTAATGTAAAGCAAGTATTTACAGTCTCACACTCCACGTATCACATGTATTGTATCTTTTCGATGATTTCATCTGTCATCCTCTTTAAATTTTTCTTGAAATGTTAGGCCGAATCGGCACTTAAAGAGCAGTCGATACTTAGACTACTCCTGGACTTAAATTCCTACCAGTGAAGTTATAAAATCTGGACATAG

Fln Alignment:

Contig11114___NELVEASRIAATVKHPFRNLLKRRNRPQLVITFFLQLFQQCTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIYAVDKVGRRALLLEAGVQMFVSQVIIAILLATGMKDESKLPHGTAIVIVLLICVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKYGIFLFFASWXXXXXXXXXXXXPETKNIPIEEMTDRVWKKHWLWKRFVTXXXXXXXXXXXVYSKKENGKGDAKAYNNSQL
B8LLP1__________________NELVEASRIAATVKHPFRNLLKRRNRPQIVITICLQIFQQFTGINAIMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIFAVDKVGRRALLLEAGVQMFISQVIIAILLATGLKDGEDLPHATAIIIVLLVCVFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFAIAQAFLSMLCHLKYGIFLFFASWVLVMSVFVLFLLPETKNIPIEEMMERVWRKHWLWKRFVTDADLMDDDDEDVYSKQENGKGNGKTYDNSQL

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
415	16			83	0.994512
419	16		83		0.994512
464	25		75		0.996473
525	33			66	1.0
526	33		66		1.0
527		66		33	1.0
565	14			85	0.993533
594	16		83		0.994512
595			83	16	0.994512
596			83	16	0.994512
818	14			85	0.993533
819	85	14			0.993533
828	16			83	0.994512
829		16		83	0.994512
830	16		83		0.994512
832			83	16	0.994512
871	33	66			1.0
875		66		33	1.0
887		80		20	0.995493
888	80			20	0.995493
988	25			75	0.996473
991		75	25		0.996473
1177		33		66	0.997452
1180	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain