SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11113

Length: 1530 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11113

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18622	30/33
SustainPine v2.0	sp_v2.0_unigene69440	1/33

Source	Descriptions	Term	Type	Identity
AutoFact	Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] gb\|AAG52317.1\|AC021666_6 unknown protein; 24499-21911 [Arabidopsis thaliana] gb\|AAO24579.1\| At1g36050 [Arabidopsis thaliana] dbj\|BAF00066.1\| hypothetical protein [Arabidopsis thalian	-	-	75%
FL-Next	tr=Endoplasmic reticulum-Golgi intermediate compartment protein, putative; Ricinus communis (Castor bean).	-	-	79%
Blast2go	endoplasmic reticulum vesicle transporter protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1692	IPR012936	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RJH7

Fln msg:

Fln protein: MQVINRLRQLDAFPKINEDFYSRTLSGGVITLVSSIVMVLLFFSEFSLFLNPVTESELIVDTSRGETLQINFDVTFPALACSILSLDAMDISGEQHLDVKHNIIKKRIDQHGNIIETRVDGIGSTKIENPLQRHGGRLEHNETYCGSCFGAETTDEDCCNSCEEVREAYRKKGWALTNPDLIDQCKREGFLQKIKEEEGEGCNLYGSIEVNKVAGNFHFAPGKSFQHSNMHVHDLLAFQKETFNVSHKIHKLSFGAHFPGVVNPLDGVEQGQQTSTGMYQYFLKVVPTVYTDIRGHKILSNQFSVTEHFKAAEIGLTRSLPGVFFFYDLSPIKVQFTERRTPFLHFLTNVCAIVGGVFTVSGIIDSFVYHGHRAIKKKIEIGKLS*

Protein Length: 387

Fln nts: AATGTAATATAAATACTGCAGAGTGAGCAGGTAAGCGAGAAGAATCCAAGGTGAGGGAGCTGCAGACCTGTGACGAAAGCTTTTTCTCTTTTCCTTCGACAAATCATTTGACGTGCTTATTCTCTGTTCCTTCGACAAATCATTTGACGTTTGACTGTTTGAGGTGCCCTGGTTGATAGGGCACATAGGATACTCATTCTAGGATTATTTGGGCAGATTTCTAATATAAACGGAAGGAATTTAGGGGGTAAAA_-_ATGCAAGTAATCAACAGGCTACGGCAGCTGGACGCGTTTCCAAAGATCAATGAGGATTTCTACAGCAGGACTCTATCTGGTGGTGTCATTACACTCGTCTCCTCCATTGTGATGGTCCTGCTTTTCTTCTCCGAATTTTCATTATTCCTTAATCCAGTCACTGAGAGTGAGCTTATAGTCGACACATCAAGAGGAGAGACCCTTCAAATCAATTTTGATGTGACTTTCCCAGCACTTGCATGTTCCATTCTTAGTCTTGATGCCATGGACATAAGTGGGGAGCAACACCTCGATGTGAAACACAATATAATCAAGAAAAGAATTGATCAACATGGAAACATTATTGAAACAAGGGTTGATGGAATTGGTTCAACAAAGATTGAGAACCCGCTTCAAAGGCATGGTGGCAGGTTGGAGCATAATGAGACATATTGCGGGTCTTGCTTTGGGGCAGAAACAACAGATGAAGACTGTTGTAATTCTTGTGAGGAAGTTCGTGAGGCATACCGCAAAAAAGGCTGGGCATTGACAAATCCCGATTTGATTGATCAGTGTAAAAGGGAAGGATTCCTTCAAAAGATTAAAGAGGAGGAAGGTGAAGGATGCAACTTATATGGATCTATTGAGGTGAACAAAGTAGCTGGGAATTTTCATTTTGCACCAGGGAAAAGTTTCCAACATTCAAATATGCATGTTCATGATCTCTTGGCATTTCAAAAGGAAACTTTCAATGTCAGTCATAAGATACATAAGTTGAGTTTTGGAGCACATTTTCCTGGAGTTGTTAATCCTCTTGATGGTGTTGAACAAGGACAGCAAACTTCAACTGGTATGTACCAGTATTTTCTGAAGGTTGTCCCCACCGTCTACACTGACATAAGAGGACATAAGATCCTATCAAATCAGTTCTCAGTGACTGAACACTTCAAGGCTGCAGAAATTGGATTGACTCGCTCCCTCCCTGGAGTGTTTTTCTTTTATGACCTTTCTCCAATAAAGGTGCAATTCACAGAACGGAGGACACCATTTTTGCATTTCCTAACTAATGTTTGTGCTATTGTTGGAGGGGTTTTCACGGTTTCTGGTATCATAGATTCCTTTGTTTATCATGGTCATCGTGCTATCAAGAAGAAAATTGAAATTGGAAAGTTAAGCTGA___ATGAAGATTGCTTGCTTGAATTGATGGCAAGTTGCAACTTTGAAGTGGACATATTGCCGGTTCATTTGTCTAGGAAACTCATTGTTTGGTGGCATTTCCAAGATGCAAAAGCATACATT

Fln Alignment:

Contig11113___VINRLRQLDAFPKINEDFYSRTLSGGVITLVSSIVMVXXXXXXXXXXXNPVTESELIVDTSRGETLQINFDVTFPALACSILSLDAMDISGEQHLDVKHNIIKKRIDQHGNIIETRVDGIGSTKIENPLQRHGGRLEHNETYCGSCFGAETTDEDCCNSCEEVREAYRKKGWALTNPDLIDQCKREGFLQKIKEEEGEGCNLYGSIEVNKVAGNFHFAPGKSFQHSNMHVHDLLAFQKETFNVSHKIHKLSFGAHFPGVVNPLDGVEQGQQTSTGMYQYFLKVVPTVYTDIRGHKILSNQFSVTEHFKAAEIGLTRSLPGVFFFYDLSPIKVQFTERRTPFLHFLTNVCAIVGGVFTVSGIIDSFVYHGHRAIKKKIEIGKLS
B9RJH7__________________IMNKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFISELRLYIHAVTETKLAVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVKHDIIKKRLDSHGNVIEARQDGIGAPKIENPLQRHGGRLEHNETYCGSCYGAEASDEDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNISHKINRLAFGDYFPGVVNPLDGVHWTQETPSGMYQYFIKVVPTVYTDVSGYTIQSNQFSVTEHFRSAEAGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKKKMEIGKFS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
131	33			66	0.997452
132	33			66	0.997452
133		66		33	0.997452
135	66			33	0.997452
356		80		20	0.995493
485	16	83			0.994512
488		87		12	0.992554
497			87	12	0.992554
574	87			12	0.992554
576	87			12	0.992554
679			87	12	0.992554
700	16			83	0.994512
716	75			25	0.996473
717		75		25	0.996473
728	33			66	0.997452
729		33	66		0.997452
902			75	25	0.996473
1042	33			66	0.997452
1043	33		66		0.997452
1045			33	66	0.997452
1046	66			33	0.997452
1049	40	60			1.0
1050	40	60			1.0
1052		60	40		1.0
1061	16		83		0.994512
1062	16			83	0.994512
1066	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain