SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11099

Length: 579 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11099

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8170	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alba DNA/RNA-binding protein [Arabidopsis thaliana] gb\|AAF88114.1\|AC021043_7 Unknown protein [Arabidopsis thaliana] gb\|AAK97729.1\| At1g29250/F28N24_8 [Arabidopsis thaliana] gb\|AAL31130.1\| At1g29250/F28N24_8 [Arabidopsis thaliana] gb\|AAM63005.1\| unknown [A	-	-	3.0e-39	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA/RNA-binding protein Alba-like	IPR002775	-	0.0	-
Sma3	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	IPR014560	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
164	25		75		0.996473
172	25		75		0.996473
173		25		75	0.996473
174	25	75			0.996473
176		75		25	0.996473
248			66	33	0.997452
281	33		66		0.997452
282		33		66	0.997452
283	33			66	0.997452
284			66	33	0.997452
385	20	80			0.995493
388			87	12	0.992554
389	87			12	0.992554
452	14			85	0.993533
454	14	85			0.993533
455			85	14	0.993533
456	85			14	0.993533
504	25			75	0.996473
505		25	75		0.996473
506	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain