SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11085

Length: 1070 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11085 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17455	17/17

Source	Descriptions	Term	Type	Identity
AutoFact	XPA-binding protein 1 [Arabidopsis thaliana] ref\|NP_974586.1\| XPA-binding protein 1 [Arabidopsis thaliana] gb\|AAL31895.1\|AF419563_1 AT4g21800/F17L22_260 [Arabidopsis thaliana] gb\|AAN28818.1\| At4g21800/F17L22_260 [Arabidopsis thaliana] gb\|AEE84504.1\| XPA-b	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	xpa-binding protein 1	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	89%
Blast2go	cell division	GO:0051301	Biological Process	89%
Blast2go	microtubule	GO:0005874	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Uncharacterised protein family, ATP binding	IPR004130	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEC2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 62 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 9, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 293 - 373

Fln protein: RCRGIHVLTASPSTLAANLYRNPNIKRKPVVVIVVGMAGSGKTTLLHRLIAHTKTSGIRGYVLNLDPAVMTLPFAANIDIRDTVKYKEVMKEFSLGPNGGILTSLNLFATKFDEVIGLVEKRADDLDNVLVDTPGQIEIFTWSASGAIITEAFASTFPTLVAYVIDTPRSTSPSTFMSNMLYACSILYKTQLPLLLVFNKIDVSHHQFALEWMEDFEAFQAAIENDKSYTSDLSRSLCLVLDEFYQNLRSVGVSAVTGAGMDEFFAAVEASADEYMENYRVDLERRRAEKNA*

Protein Length: 294

Fln nts: CAGAGAACCAGAAGAAGCCTAGTACAGCGAGTAACG_-_ATGCAGAGGCATCCACGTCCTCACGGCATCGCCTTCCACGCTAGCAGCCAATTTGTACCGGAACCCAAACATCAAAAGGAAGCCGGTTGTCGTCATTGTGGTTGGAATGGCAGGAAGTGGTAAGACAACGCTGTTGCATCGACTTATTGCTCACACAAAGACGTCAGGAATACGAGGATATGTTTTGAATCTTGACCCTGCAGTGATGACTTTGCCTTTTGCTGCTAATATCGACATTCGAGACACTGTCAAATACAAGGAAGTAATGAAAGAGTTTAGCCTCGGTCCCAACGGGGGGATTTTGACATCTTTGAACTTATTCGCTACCAAATTTGACGAGGTTATAGGATTGGTGGAGAAAAGGGCAGATGATCTTGACAACGTTCTTGTAGATACACCAGGGCAGATAGAAATATTTACTTGGTCTGCTTCAGGAGCCATAATTACAGAAGCTTTTGCTTCTACCTTTCCCACTTTGGTGGCTTATGTGATCGATACTCCTCGCTCAACAAGTCCGTCTACTTTTATGAGCAATATGCTTTATGCTTGCAGTATTCTTTACAAGACACAGTTGCCTCTTCTTCTTGTGTTTAACAAGATTGATGTGTCACACCATCAGTTTGCTTTAGAGTGGATGGAGGATTTCGAGGCATTTCAGGCAGCAATAGAGAATGACAAATCCTACACTTCTGACCTCAGTAGAAGCTTGTGTCTTGTACTTGATGAGTTTTATCAAAATCTGCGCTCAGTTGGGGTATCGGCAGTAACAGGTGCTGGAATGGATGAGTTCTTTGCAGCAGTTGAAGCAAGCGCAGATGAGTACATGGAAAACTACAGGGTTGATCTCGAGAGGCGACGTGCAGAAAAAAACGCTTAGAGGAGGAGCGGAAGAAAGCAGACATGGACAAATTGAGAAAAGATTTAGAGGAGACAAGGGGTGAACGGGTTGTTTTGAGCTCTGGTCCACCTAAGGAAGATGACACGGAAGAAAATGAAGATGAGGAGCAAGAGGTTTATACTGAAGAGGAAACATT

Fln Alignment:

Contig11085___TASPSTLAANLYRNPNIKRKPVVVIVVGMAGSGKTTLLHRLIAHTKTSGIRGYVLNLDPAVMTLPFAANIDIRDTVKYKEVMKEFSLGPNGGILTSLNLFATKFDEVIGLVEKRADDLDNVLVDTPGQIEIFTWSASGAIITEAFASTFPTLVAYVIDTPRSTSPSTFMSNMLYACSILYKTQLPLLLVFNKIDVSHHQFALEWMEDFEAFQAAIENDKSYTSDLSRSLCLVLDEFYQNLRSVGVSAVTGAGMDEFFAAVEASADEYMENYRVDL
D5AEC2__________________TASPSTSEAKSSQNPNLRRKPVVIIVVGMAGSGKTTLLHRLVAYTKMSGIRGYVLNLDPAVITLAYAANIDIRDTVKYKEVMKEFNLGPNGGILTSLNLFATKFDEVIGLVEKRADDIDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTLVSYVIDTPRSTSPVTFMSNMLYACSILYKTRLPLILVFNKIDVSHHQFALEWMEDFEAFQAAIENDKSYTSDLSRSLCLVLDEFYQNLRSVGVSAVTGDGVDEFFVAVEASADEYMENYRVDL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
785		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain