SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11068

Length: 530 nt

UniGene Fasta

>biog3_v1.0_unigene11068
AATGTTCTTGTGTTTTTGTGTCATGGTGTAGACTTCACAAGCGTTATTCATGTTCCATATTATTGGCGAACTTTTGCCGCACAGCCATGTTCTTCTCAATGGTATGTGTGGATTTTCATGCCTTTCATCTGGCTTGGTTTCCCTGTATGGGGATGGCGCTGGGCAACTTCACATGTGATTTCAAAGTACACTATTGGAGAATTTAACCAGGAAACATGGGTTCTACCACGGCTTGCGTTGCAGTTTTTCCTGCCATTTGGGCAGGATAAAATCAACAATCTAATAGAGGAGGCAATTGTTGAAGCTGATAGAATAGGAGTGAAAGTAATTGCTCTTGGAGGTCTAGTTAAGAACGAGGTCTTGAATGGAGGGGGAGAGCTATTTGTCAGGAAGCATCCCAATCTTCACATTCGAGTGGTTCATGGAAATACTTTGACAACTGCTGTGCTTTTACATGAACTTCCACACAATGTAGATACAGTATTCCTTACTGGCTCAACATCAAAAATTGGCAAGGCTATTGCTCTCTA

Ace file of the UniGene biog3_v1.0_unigene11068

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28385	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	lipid transfer protein; glossy1 homolog [Arabidopsis thaliana]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	70%
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	70%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 176 - 623

Fln protein: NVLVFLCHGVDFTSVIHVPYYWRTFAAQPCSSQWYVWIFMPFIWLGFPVWGWRWATSHVISKYTIGEFNQETWVLPRLALQFFLPFGQDKINNLIEEAIVEADRIGVKVIALGGLVKNEVLNGGGELFVRKHPNLHIRVVHGNTLTTAVLLHELPHNVDTVFLTGSTSKIGKAIAL

Protein Length: 177

Fln nts: AATGTTCTTGTGTTTTTGTGTCATGGTGTAGACTTCACAAGCGTTATTCATGTTCCATATTATTGGCGAACTTTTGCCGCACAGCCATGTTCTTCTCAATGGTATGTGTGGATTTTCATGCCTTTCATCTGGCTTGGTTTCCCTGTATGGGGATGGCGCTGGGCAACTTCACATGTGATTTCAAAGTACACTATTGGAGAATTTAACCAGGAAACATGGGTTCTACCACGGCTTGCGTTGCAGTTTTTCCTGCCATTTGGGCAGGATAAAATCAACAATCTAATAGAGGAGGCAATTGTTGAAGCTGATAGAATAGGAGTGAAAGTAATTGCTCTTGGAGGTCTAGTTAAGAACGAGGTCTTGAATGGAGGGGGAGAGCTATTTGTCAGGAAGCATCCCAATCTTCACATTCGAGTGGTTCATGGAAATACTTTGACAACTGCTGTGCTTTTACATGAACTTCCACACAATGTAGATACAGTATTCCTTACTGGCTCAACATCAAAAATTGGCAAGGCTATTGCTCTCTA

Fln Alignment:

Contig11068___VFLCHGVDFTSVIHVPYYWRTFAAQPCSSQWYVWIFMPFIWLGFPVWGWRWATSHVISKYTIGEFNQETWVLPRLALQFFLPFGQDKINNLIEEAIVEADRIGVKVIALGGLVKNEVLNGGGELFVRKHPNLHIRVVHGNTLTTAVLLHELPHNVDTVFLTGSTSKIGKAIAL
D5A835__________________VFLAHIVDVLSSLHVRFLLRGFCSTPFATWWFLLPLWPVV-IPVALAMWVWAKTFVNTGHRLKGRLHQTWIVPRFGFQYFIPFAQAGINNLIQDAILSADKMGVKVISLAALNKNEALNGGGTLFVNRLPDLRVRVVHGNTLTAAVILNELNPDVKEVFLTGATSKLGRVIAL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
297		12		87	0.992554
298	12		87		0.992554
386	20			80	0.995493
389			80	20	0.995493
390			80	20	0.995493
420	25			75	0.996473
424			75	25	0.996473
481			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain