SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11066

Length: 655 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11066 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1713	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	translocase of chloroplast 120 [Arabidopsis thaliana] sp\|Q9LUS2.1\|TC120_ARATH RecName: Full=Translocase of chloroplast 120, chloroplastic; Short=AtToc120; AltName: Full=120 kDa chloroplast outer envelope protein dbj\|BAB02753.1\| chloroplast outer envelope	-	-	61%
FL-Next	sp=Translocase of chloroplast 120, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to chloroplast	GO:0045036	Biological Process	84%
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	hydrolase activity, acting on acid anhydrides	GO:0016817	Molecular Function	84%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	84%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	0.0	-
Sma3	AIG1	IPR006703	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
203	25			75	0.996473
396	20	80			0.995493
397	20			80	0.995493
399			20	80	0.995493
400	80			20	0.995493
402	20			80	0.995493
420	33			33	0.997753
421	66			33	0.997452
448	16			83	0.994512
449	16			83	0.994512
451	83		16		0.994512
522	80	20			0.995493
524		20		80	0.995493
530	25			75	0.996473
534			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain