SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11058

Length: 1232 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11058

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5760	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1068 domain containing protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	uncharacterized protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	74%
Blast2go	vacuolar sequestering of sodium ion	GO:0043182	Biological Process	74%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1068	IPR010471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSA5

Fln msg:

Fln protein: MAQSTPISCTPGLLKLLLVLLAMALAVYIVGPPLYWQFREGLTLVKQAATCSPCVCDCTLEAGLSIPPGLSNLSLADCGKLDPQFRQDMEKNYTDLLSEELRLQQTVAEENREHSVMTVMDAKRLASQYQKEAEKCNAGMETCEGARERAEASLRAEKKVTALWEQRARQMGWKDK*

Protein Length: 178

Fln nts: CGGGACAACAAGCACATGGAACCCAACGAATGATTGCTTTGACAGAGCTGAACCTAGAATGACGAGAACCCACCTCTGTAACGAAAGTCAAATGTGATTTTATATGGTAGATGTGAATGGCACGAGGTGGTGTTGTGGCAAGTAAATAGAATTTTCATCCCCCTAAGTGCTTAATTAAGCTCATGGTGCCCAATCTCTCACTGGACAACTATAATAGTAGTGATGGTTAGAGGTGAGGTAAGGGGCTCAAGTGGGCTGGAGAGACTGACAAGCAATTATGATATCTGCTTCGAGTGAGTGACTTGGGCATTATAACTGTTGTCTTTTTTATGGTTTACGTAGAGGATCAGAACTGCGTATTGAATTTGAGTTTCAGGCATCGAAAGAACTGTTTACAGATCAGTGCCTGATGCAGCTAATTAATGAGGATACTTGAATATGTAAGCAGTAAATCGGAATATTGAGTATCAAGGCACTGGTGGGATACTCACTTCGATTGGATCAGACTGATCTCGAAGACATATTGGCAGAGATCAGTCTCAAAATGAGTGGTTGAGAGCAAAATCTGGTTGCCCAAATCATTAGAG_-_ATGGCACAATCGACACCCATATCTTGTACTCCAGGCTTGCTGAAGTTACTGCTAGTACTGTTAGCCATGGCACTAGCAGTCTATATAGTAGGTCCTCCCTTGTATTGGCAGTTCAGAGAGGGCCTCACTCTTGTCAAGCAGGCAGCAACCTGCTCTCCTTGTGTATGCGACTGCACTTTAGAAGCTGGGCTCAGTATTCCTCCAGGTTTGAGCAATCTTTCCTTGGCAGATTGCGGGAAGCTTGATCCTCAGTTTAGGCAGGATATGGAAAAGAATTACACAGATCTTCTCTCTGAAGAGTTGAGGTTACAACAAACTGTAGCGGAGGAAAATCGGGAGCATTCTGTAATGACAGTAATGGATGCCAAGAGATTGGCTTCTCAATATCAGAAAGAAGCAGAAAAATGCAATGCTGGAATGGAAACATGCGAAGGAGCCAGAGAGAGAGCAGAGGCATCATTAAGAGCTGAGAAGAAGGTTACAGCGCTATGGGAACAGAGGGCTCGCCAAATGGGTTGGAAAGATAAATAA___ATTCTGGATACCAATGTCAAAGTGGAATCTGGGAATGCATAAGAGTGGAAGACAAGCAATCTATGAAATATTCGAAATAATAGGAAGAAAACATACATGGAGAGTTGGCTTTGC

Fln Alignment:

Contig11058___MAQSTPISCTPGXXXXXXXXXXXXXXVYIVGPPLYWQFREGLTLVKQAATCSPCVCDCTLEAGLSIPPGLSNLSLADCGKLDPQFRQDMEKNYTDLLSEELRLQQTVAEENREHSVMTVMDAKRLASQYQKEAEKCNAGMETCXXXXXXXXXXXXXXKKVTALWEQRARQMGWKDK
A9NSA5__________________MAQPTPISCTPGLLKLLLVLLAMALSVYIVGPPLYWQFREGLTLVRQAATCSPCVCDCTLEAGLSIPPGLSNLSFSDCGKLDPQFRQDMEKNFTDLLSEELRLQQTVAEENREHSVMTLLDAKRLASQYQKEAEKCNAGMETCEGARERAQASLLAEKKLSVIWEQRARQMGWKDK

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
218		33		66	0.997452
310	20			80	0.995493
312	80		20		0.995493
318	20		80		0.995493
319		20		80	0.995493
320	20			80	0.995493
321			80	20	0.995493
323	20	80			0.995493
324	25			75	0.996473
326			25	75	0.996473
472			80	20	0.995493
474		80		20	0.995493
565			33	66	0.997452
678	60			40	1.0
699	16		83		0.994512
701			16	83	0.994512
702		83		16	0.994512
710	16	16	66		0.988813
712	16	66			0.988813
714		83		16	0.994512
812	33			66	0.997452
813		33	66		0.997452
814	33		66		0.997452
815		66		33	0.997452
816	66			33	0.997452
880	20			80	0.995493
881	20	80			0.995493
884	80			20	0.995493
900	80			20	0.995493
901		80		20	0.995493
974	85		14		0.993533
1015		14		85	0.993533
1016	14		85		0.993533
1017		85		14	0.993533
1018	14		71	14	0.984337
1021			83	16	0.994512
1022			83	16	0.994512
1215		33		66	0.997452
1216	33		66		0.997452
1218			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain