SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11048

Length: 860 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11048

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9718	2/11
SustainPine v2.0	sp_v2.0_unigene16741	9/11

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	pentatricopeptide repeat-containing	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX6

Fln msg: Overlapping hits, possible frame ERROR between 38 and 32, and possible frame ERROR between 181 and 208, STOP codon was not found. Distance to subject end: 89 aas, your sequence is shorter than subject: 286 - 462

Fln protein: CLQDDAGSQxxxxTRTPSAPNLTSMDFPALSSEMLNGLSQYTDSEVQQAVNTLRREEADxxxxxxxxxxGGSRSATDFATIVRKSASDSGQWKYEKNGAVDINLGSSRNAQVSSGSSAANNRVINGDRLRSYTSTRQNQQLWLETGEAVASMYSNLREEARDHARVRNAYFEQARQAYVSGNKALAKDLSAKGQWHNGLMKAAHRKAGEAIYHQRNVGTTHIPNLIQGEDRLIDLHGLHVNEAIHVLKNELAGLRNKARSIGQRQQVLICVGTGHHTKGSRTPARL

Protein Length: 287

Fln nts: AATGTCTTCAAGATGATGCTGGTTCACAGxxxxxxxxxxxxACAAGGACACCGTCTGCTCCAAACCTTACTAGCATGGATTTTCCTGCACTGAGTTCAGAAATGTTAAATGGCCTGTCACAATATACAGACAGTGAAGTCCAACAAGCAGTGAACACACTTAGGAGGGAGGAGGCAGATAxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGGTGGTTCTAGATCTGCTACTGACTTTGCTACAATTGTCAGGAAAAGCGCATCTGATTCTGGTCAGTGGAAATATGAGAAAAATGGTGCTGTGGATATAAATCTTGGGTCTAGTAGAAATGCTCAAGTTTCATCAGGTTCCTCTGCAGCGAATAACAGAGTGATCAATGGAGACAGACTACGGAGCTATACTAGTACTCGCCAGAATCAACAACTTTGGCTTGAAACTGGAGAAGCAGTAGCGAGTATGTATTCAAACCTGAGAGAAGAAGCTCGGGATCACGCTCGTGTTCGAAATGCATATTTTGAACAGGCTCGGCAAGCTTACGTGTCAGGTAATAAGGCTCTTGCAAAGGACTTGAGTGCAAAAGGGCAGTGGCACAATGGGCTAATGAAAGCTGCCCATCGTAAAGCCGGAGAAGCAATTTATCATCAAAGGAATGTAGGAACTACTCATATTCCAAACCTCATTCAAGGAGAGGATAGGTTGATTGATCTTCACGGTCTCCATGTTAATGAAGCCATACATGTATTAAAGAATGAACTTGCTGGTCTCCGTAATAAAGCAAGGTCTATTGGTCAGCGGCAACAGGTTTTAATTTGTGTTGGGACAGGACACCATACAAAGGGATCACGTACACCAGCAAGGTTGCC

Fln Alignment:

Contig11048___LQDDAGSQQxxHTRTPSAPNLTSMDFPALSSEMLNGLSQYTDSEVQQAVNTLRREEADKxxxxxxxxxGGSRSATDFATIVRKSASDSGQWKYEKNGAVDINLGSSRNAQVSSGSSAANNRVINGDRLRSYTSTRQNQQLWLETGEAVASMYSNLREEARDHARVRNAYFEQARQAYVSGNKALAKDLSAKG
B8LKX6__________________LQDDAGSQQxxHSRTPSAPNLTSMDFPALSSEMLNGLSQYSDSEVQQAVNTYRRGEADKxxxxxxxxxGSSRSATDFATVVRKNASDSVQWKYEKNGAVDINLGSSRNPQVSSGSSAVNSRVINGDRLRSYTSTRQNQQLWLETGEAVGSMYSDLREEARDHARVRNAYFEQARQAYLVGNKALAKELSAKG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
729	20			80	0.995493
730		20	80		0.995493
732	80			20	0.995493
733			80	20	0.995493
831		66		33	0.997452
832		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain