SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11037

Length: 2205 nt

UniGene Fasta

>biog3_v1.0_unigene11037
AATGTTGAGATAATAACTCCCTCTTTCCATCTTCAAGTGTCCTCTTTGAAAAATCTGAGCCACCCACCTGAGAAAATCCTGGTTTCAGTGGGTGTTTGTTGTGAAAAATATCAGGTACCCACCTGAGACAAACCGGGTGGCTTCAGTGGCTGTGCTGAGGTTTTTGGGACTTTGGGTTTGTGGGACTCTGTTCCACCATGTCGATGTATGGGCGAGATCCGTGGGGAGGAGCCCTGGAGATCAATGCCGATTCAGCCACGGACGATGACAGGAGCAGGAACTTGCAGGACTTTGACAGATCCGCTCTTTCCAGGCAGCTAGATGAGACTCAGCAGAGCTGGCTGTTGGGGCCTGGAGAGCAGAAGAAGAAGAAGTATGTGGATCTGGGATGCATTGTCTGCAGCAGGACTGTTTTCAAGTGGATTGTTATATCAATTTTATTGTCGGGTTCGATAGCCGGACTGGTGACTCTTATTGTCAAATTGGTGCCCAGACATAAACATTCTGCTCCGCCTCCTGATAGTTATACCAAGGCACTTCACAAGGCTCTGATGTTTTTCAATGCACAGAGATCCGGGCCTCTTCCGAAGCACAACAACGTATCTTGGCGAGGAAACTCTTGCATGCGTGATGGGCTATCTGATGCTGGATCAAACCACGCCAATTTGGTCGGTGGGTTTTATGATGCGGGGGATGCTATCAAGTTCAATTTCCCTGCTGCATTCGCTATGACTATGCTCAGTTGGAGTGTTATTGAGTACAGTGGCAAGTATGAATCTGCAGGAGAGCTCAATCATGCCAAAGACATCATCAAATGGGGAGCAGATTACTTTCTGAAGACATTCAATTCCTCTGCTGATACTATAAGTTTGATACATGCTCAGGTTGGGTTAGGAGATACCTCAGGGGGAGCTTCTAGTCCTAATGATCATTACTGTTGGATGAGGCCTGAAGATGTCGACTACCCACGCCCTGTATATGATTGCCATTCTTGTTCAGACTTGGCTGCAGAAACGGCTGCTGCCTTAGCTGCAGCATCTATTGTTTTCAAGGATAACAAGCTTTACTCACAAAAACTTGTCAAGGGTGCTACAACGCTCTTCAAGTTCTCCAGGGAACAAAGAGGTCGATATAGTCCTAGTGGAAGTGATGCTTCCAATTTTTACAATTCTTCTGGCTACTATGATGAGTATGTTTGGGGAGGTGCATGGATGTATTATGCCACAGGGAATAACTCTTATCTTCAACTGGCTACTACATTGGGAATTGCCAAGCGAGCTGGTGCATTCCGTGGTGGGCAGGACTATGGTGTTTTAAGCTGGGATAACAAGCTAGCTGGTGCCCAAGTTCTCTTGAGCAGGCTGAGGCTTTTCTTAAGCCCTGGATATCCATATGAAGACGTTTTGCAGAGTTATCACAACCAGACTAATATTGTGATGTGCTCGTACCTTCCTGTCTTCCGTACCTTCAATAGAACAAGAGGAGGTTTGATTCAGCTGAACCATGGAAGGCCCCAACCTCTACAATATGTGGCAAATGCAGCTTTTCTTGCAGCAGTTTATAGTGATTATTTGACTGCTGCAGATATTCCTGGCTGGAACTGTGGCCCAAATTTTTTCAGTACGGAAACATTGCGTGACTTTGCACGAACTCAGATAAATTATATCCTAGGTAAAAATCCAATGAAGATGAGCTATGTTGTGGGATATGGAAGCCATTACCCCAAGCATGTACATCACCGTGGGGCATCCATCCCAAAGAACAAGATAAAGTACAGTTGCAAAGGAGGATGGAAGTGGCGTGACAGTCCAAGACCCAATCCCAATGTGATTGTGGGAGCCATGGTTGCTGGGCCTGATAAGCGTGATATGTTCCATGACGTTCGAACTAATTACAATTATACAGAGCCAACACTTGCAGGCAATGCTGGGTTGGTTGCGGCTTTGGTTTCCTTATCAGGGGGTGATACTGGGGGAATAGATAAGAATACAATGTTTTCTGCAGTTCCACCCATGTTCCCAATCCCCCCCACACCAGCCCCTTGGAATCCTTGAGGTTGATAAGGTTCGTGCAGTCGTAGGAGAAATTCTTAGATGGTTGAGCTAGCTTTGATTAAAATGTTTTGTTATTTCAACATACATTGACGCAGATTCAAAAAGGTTCCCTACCAGCCCAGAGTTTTTTATGAACCTTAGAAAGTACATT

Ace file of the UniGene biog3_v1.0_unigene11037

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15930	17/77
SustainPine v2.0	sp_v2.0_unigene17370	8/77
SustainPine v2.0	sp_v2.0_unigene32284	52/77

Source	Descriptions	Term	Type	Identity
AutoFact	Endoglucanase n=2 Tax=Pinaceae RepID=A6N838_PINTA	-	-	92%
FL-Next	tr=Endoglucanase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	membrane-anchored endo- -beta-glucanase	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	0.0	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A6N838

Fln msg:

Fln protein: MSMYGRDPWGGALEINADSATDDDRSRNLQDFDRSALSRQLDETQQSWLLGPGEQKKKKYVDLGCIVCSRTVFKWIVISILLSGSIAGLVTLIVKLVPRHKHSAPPPDSYTKALHKALMFFNAQRSGPLPKHNNVSWRGNSCMRDGLSDAGSNHANLVGGFYDAGDAIKFNFPAAFAMTMLSWSVIEYSGKYESAGELNHAKDIIKWGADYFLKTFNSSADTISLIHAQVGLGDTSGGASSPNDHYCWMRPEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDASNFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTGGIDKNTMFSAVPPMFPIPPTPAPWNP*

Protein Length: 620

Fln nts: AATGTTGAGATAATAACTCCCTCTTTCCATCTTCAAGTGTCCTCTTTGAAAAATCTGAGCCACCCACCTGAGAAAATCCTGGTTTCAGTGGGTGTTTGTTGTGAAAAATATCAGGTACCCACCTGAGACAAACCGGGTGGCTTCAGTGGCTGTGCTGAGGTTTTTGGGACTTTGGGTTTGTGGGACTCTGTTCCACC_-_ATGTCGATGTATGGGCGAGATCCGTGGGGAGGAGCCCTGGAGATCAATGCCGATTCAGCCACGGACGATGACAGGAGCAGGAACTTGCAGGACTTTGACAGATCCGCTCTTTCCAGGCAGCTAGATGAGACTCAGCAGAGCTGGCTGTTGGGGCCTGGAGAGCAGAAGAAGAAGAAGTATGTGGATCTGGGATGCATTGTCTGCAGCAGGACTGTTTTCAAGTGGATTGTTATATCAATTTTATTGTCGGGTTCGATAGCCGGACTGGTGACTCTTATTGTCAAATTGGTGCCCAGACATAAACATTCTGCTCCGCCTCCTGATAGTTATACCAAGGCACTTCACAAGGCTCTGATGTTTTTCAATGCACAGAGATCCGGGCCTCTTCCGAAGCACAACAACGTATCTTGGCGAGGAAACTCTTGCATGCGTGATGGGCTATCTGATGCTGGATCAAACCACGCCAATTTGGTCGGTGGGTTTTATGATGCGGGGGATGCTATCAAGTTCAATTTCCCTGCTGCATTCGCTATGACTATGCTCAGTTGGAGTGTTATTGAGTACAGTGGCAAGTATGAATCTGCAGGAGAGCTCAATCATGCCAAAGACATCATCAAATGGGGAGCAGATTACTTTCTGAAGACATTCAATTCCTCTGCTGATACTATAAGTTTGATACATGCTCAGGTTGGGTTAGGAGATACCTCAGGGGGAGCTTCTAGTCCTAATGATCATTACTGTTGGATGAGGCCTGAAGATGTCGACTACCCACGCCCTGTATATGATTGCCATTCTTGTTCAGACTTGGCTGCAGAAACGGCTGCTGCCTTAGCTGCAGCATCTATTGTTTTCAAGGATAACAAGCTTTACTCACAAAAACTTGTCAAGGGTGCTACAACGCTCTTCAAGTTCTCCAGGGAACAAAGAGGTCGATATAGTCCTAGTGGAAGTGATGCTTCCAATTTTTACAATTCTTCTGGCTACTATGATGAGTATGTTTGGGGAGGTGCATGGATGTATTATGCCACAGGGAATAACTCTTATCTTCAACTGGCTACTACATTGGGAATTGCCAAGCGAGCTGGTGCATTCCGTGGTGGGCAGGACTATGGTGTTTTAAGCTGGGATAACAAGCTAGCTGGTGCCCAAGTTCTCTTGAGCAGGCTGAGGCTTTTCTTAAGCCCTGGATATCCATATGAAGACGTTTTGCAGAGTTATCACAACCAGACTAATATTGTGATGTGCTCGTACCTTCCTGTCTTCCGTACCTTCAATAGAACAAGAGGAGGTTTGATTCAGCTGAACCATGGAAGGCCCCAACCTCTACAATATGTGGCAAATGCAGCTTTTCTTGCAGCAGTTTATAGTGATTATTTGACTGCTGCAGATATTCCTGGCTGGAACTGTGGCCCAAATTTTTTCAGTACGGAAACATTGCGTGACTTTGCACGAACTCAGATAAATTATATCCTAGGTAAAAATCCAATGAAGATGAGCTATGTTGTGGGATATGGAAGCCATTACCCCAAGCATGTACATCACCGTGGGGCATCCATCCCAAAGAACAAGATAAAGTACAGTTGCAAAGGAGGATGGAAGTGGCGTGACAGTCCAAGACCCAATCCCAATGTGATTGTGGGAGCCATGGTTGCTGGGCCTGATAAGCGTGATATGTTCCATGACGTTCGAACTAATTACAATTATACAGAGCCAACACTTGCAGGCAATGCTGGGTTGGTTGCGGCTTTGGTTTCCTTATCAGGGGGTGATACTGGGGGAATAGATAAGAATACAATGTTTTCTGCAGTTCCACCCATGTTCCCAATCCCCCCCACACCAGCCCCTTGGAATCCTTGA___GGTTGATAAGGTTCGTGCAGTCGTAGGAGAAATTCTTAGATGGTTGAGCTAGCTTTGATTAAAATGTTTTGTTATTTCAACATACATTGACGCAGATTCAAAAAGGTTCCCTACCAGCCCAGAGTTTTTTATGAACCTTAGAAAGTACATT

Fln Alignment:

Contig11037___MSMYGRDPWGGALEINADSATDDDRSRNLQDFDRSALSRQLDETQQSWLLGPGEQKKKKYVDLGCIVCSRTVFKWIVISILLSGSIAGLVTLIVKLVPRHKHSAPPPDSYTKALHKALMFFNAQRSGPLPKHNNVSWRGNSCMRDGLSDAGSNHANLVGGFYDAGDAIKFNFPAAFAMTMLSWSVIEYSGKYESAGELNHAKDIIKWGADYFLKTFNSSADTISLIHAQVGLGDTSGGASSPNDHYCWMRPEDVDYPRPVYDCHSCSDXXXXXXXXXXXXSIVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDASNFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTXXXXXXXXXXXXXXXXXDTGGIDKNTMFSAV
A6N838__________________MSMYGRDPWGGALEINADSATDDDRSRNLQDFDRSALSRQLDETQQSWLLGPGEQKKKKYVDLGCIVCSRTVFKWIVISILLSGSIAGLVTLIVKLVPRHKHSAPPPDSYTKALHKALMFFNAQRSGPLPKHNNVSWRGNSCMRDGLSDPGSNHANLVGGFYDAGDAIKFNFPAAFAMTMLSWSVIEYSGKYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMRPEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDVSKFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTMGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTGGIDKNTMFSAV

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
457	20		80		0.995493
624	16	83			0.994512
625	16			83	0.994512
628		83		16	0.994512
643	83	16			0.994512
650		16	83		0.994512
742	14		85		0.993533
745		85		14	0.993533
780	87		12		0.992554
785			87	12	0.992554
807	85			14	0.993533
808	85			14	0.993533
877	16			83	0.994512
878		16	83		0.994512
881	83			16	0.994512
891	16		83		0.994512
892	16			83	0.994512
895			83	16	0.994512
897			50	50	1.0
929		50		50	1.0
933	14		85		0.993533
936		85	14		0.993533
937	85			14	0.993533
1054	12			87	0.992554
1057	87			12	0.992554
1058			87	12	0.992554
1113	12			87	0.992554
1114		12		87	0.992554
1115	12	87			0.992554
1117		87		12	0.992554
1127	83	16			0.994512
1129			83	16	0.994512
1130	83			16	0.994512
1166	33			66	0.997452
1214	33	66			0.997452
1337	66		33		0.997452
1438	11			88	0.923564
1461	11		88		0.923564
1462		11		88	0.923564
1463	11	88			0.923564
1486		12	87		0.992554
1488			87	12	0.992554
1489			87	12	0.992554
1542	87	12			0.992554
1545			87	12	0.992554
1674	10	90			0.90298
1694	10		90		0.90298
1699			90	10	0.90298
1713		10		90	0.90298
1716			90	10	0.90298
1774		11		88	0.923564
1776	88			11	0.923564
1777	88			11	0.923564
1783	12		87		0.992554
1786	14		85		0.993533
1789	85			14	0.993533
1790	85			14	0.993533
1861	20	80			0.995493
1863			80	20	0.995493
1880	16	83			0.994512
1884			83	16	0.994512
1888	14			85	0.993533
1889	14			85	0.993533
1890		85		14	0.993533
1892	85			14	0.993533
1935			83	16	0.994512
1940	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
361	374	AGA AGA AGA AGA AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain