SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11028

Length: 813 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11028

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene118	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	K+ channel tetramerisation [Medicago truncatula]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	potassium channel tetramerization domain-containing protein	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transport	GO:0006813	Biological Process	60%
Blast2go	voltage-gated potassium channel activity	GO:0005249	Molecular Function	60%
Blast2go	voltage-gated potassium channel complex	GO:0008076	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Potassium channel, voltage dependent, Kv, tetramerisation	IPR003131	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKP6

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 270 - 464

Fln protein: MSSLLARSALSTDSDEIFFDRDPHLFAILLGVLRTGKLSASTWEKFDSEALIDEASYYGILEPVKKAMAPAALDGIDVERVSMVIPNGRDCPLAICASHDGSVWVGHGSKITAYDWALRKHTTTLTDLHSVETMNRVSETLAAVGAEDFPGLHIYDTKNAAHVKSLTWSDKSDTRIYKPCVRAIASTDTSIFASFENGQRTDNTILVVDKEKLEVSREVGRQNGNSAHSKVSTILQFVNSQNLLMVAGVHGGAFGYSGYIRLFDARADKT

Protein Length: 271

Fln nts: AATGTCCTCCCTCCTCGCCCGCTCGGCTCTGTCCACAGACTCCGACGAAATCTTCTTCGACAGAGATCCGCATCTGTTCGCGATCCTCCTCGGCGTTCTCCGCACGGGAAAGCTCTCGGCATCGACATGGGAGAAATTCGACAGCGAAGCCCTTATAGACGAGGCCTCCTATTACGGAATCCTGGAGCCCGTCAAGAAAGCCATGGCTCCGGCGGCCCTAGACGGAATCGATGTCGAAAGAGTCTCAATGGTTATTCCCAATGGCCGGGATTGCCCTCTGGCCATCTGCGCTTCGCACGACGGTTCTGTTTGGGTCGGCCACGGCAGCAAAATCACGGCATACGACTGGGCGCTCAGGAAACACACCACGACATTGACGGATCTTCACAGTGTCGAAACCATGAACAGGGTTTCAGAAACCCTAGCGGCCGTCGGTGCAGAGGATTTTCCAGGGTTGCACATATACGACACCAAGAATGCGGCCCATGTGAAGAGCCTGACTTGGTCTGACAAATCCGACACACGGATTTACAAACCCTGCGTTCGAGCCATCGCCTCGACGGATACTTCCATCTTCGCGAGCTTCGAAAATGGGCAGAGGACCGATAACACAATCCTGGTTGTCGACAAGGAAAAACTCGAGGTTTCTCGAGAGGTCGGCCGACAAAACGGTAACTCTGCGCACTCCAAGGTTTCAACGATTTTGCAGTTTGTGAATTCTCAGAACCTTCTCATGGTCGCAGGCGTACATGGTGGCGCCTTCGGATACAGCGGTTACATTCGTCTGTTCGATGCAAGGGCCGACAAGACATT

Fln Alignment:

Contig11028___SSLLARSALSTDSDEIFFDRDPHLFAILLGVLRTGKLSASTWEKFDSEALIDEASYYGILEPVKKAMAPAALDGIDVERVSMVIPNGRDCPLAICASHDGSVWVGHGSKITAYDWALRKHTTTLTDLHSVETMNRVSETLAAVGAEDFPGLHIYDTKNAAHVKSLTWSDKSDTRIYKPCVRAIASTDTSIFASFENGQRTDNTILVVDKEKLEVSREVGRQNGNSAHSKVSTILQFVNSQNLLMVAGVHGGAFGYSGYIRLFDARADK
B8LKP6__________________TSLLARSALSTDSAEIFFDRDPHLFALLLGVLRTGKLSASTWEKFDIEALIDEASYYGILEPVKKAMAPEALDGIDVERVSMVVPNGRDYPLAICSSHDGSVWVGHGSKITPYDWALRKQTTTLTDLHSVDTMNRISETLAAVGAEDFPGLHIYDTKNAAHMKSLTWSDKSDTRVYKPCVRALASSDSSIFASFENGQRTENTILVVDKERLEVSREIGRQSGNSAHSKVSTILQFVNSENLLMVGGVHGGTFGFSGYIRLFDARADK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
359	33		66		0.997452
400	75		25		0.996473
401		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain