SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11014

Length: 1046 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11014 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4762	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	DUF221 multi-domain protein	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	uncharacterized membrane protein ylr241w-like	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	72%
Blast2go	response to light stimulus	GO:0009416	Biological Process	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 348 - 717

Fln protein: ASRIVQSSNPMLWVTEPAPEPRDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLIPVTLVQGLTQLTELEAFLPFLKKVLKITIVGDIVTGYLPSLILQMFLFIVPPIMMLFAAMRGYISNGGKMKSACIMMVYFTIWNVFFATVLSGSVISQINTFISNPKDIPRRLAVAVPGQATFFIAYVLTSGWTGLSLEIARLFPLITNFLTRHCCCCKATDDADCAPLFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQLLKVYSPRFETAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKLPFASGWVIPMTVITLLFNDYCRKRFLPIFNRYPAE

Protein Length: 349

Fln nts: AGCATCACGAATTGTGCAGTCATCTAATCCAATGTTGTGGGTGACAGAACCAGCACCTGAACCGAGGGATATCTACTGGCCATTTCTTTCTGCACCCTATATCCAGCTATGGATCAGTAAATTTGTGGTTGTGGTGGCAGTCTTTTTTCTTACAATCCTGTTCCTGATACCTGTCACATTGGTACAGGGTCTTACTCAACTGACAGAATTGGAAGCTTTCTTACCATTCCTGAAAAAGGTTCTTAAAATAACAATTGTAGGTGATATAGTAACCGGTTACCTCCCCAGTTTGATTCTGCAAATGTTTCTCTTCATTGTTCCTCCTATAATGATGCTCTTCGCTGCCATGCGAGGTTATATCTCCAATGGTGGCAAGATGAAGAGTGCATGCATCATGATGGTGTACTTCACAATATGGAATGTGTTCTTTGCAACTGTTCTGTCAGGATCAGTTATTAGCCAAATCAATACTTTCATTTCTAATCCTAAAGATATTCCTCGGCGGCTTGCAGTTGCAGTTCCTGGCCAGGCGACATTCTTCATTGCTTATGTTTTGACATCTGGATGGACAGGATTATCTTTAGAAATTGCTAGACTTTTCCCCCTTATTACAAACTTTTTGACAAGGCACTGTTGCTGTTGCAAAGCCACAGACGATGCTGATTGCGCACCATTATTTCCTTACCATCGTGACATACCAAAAGTGCTCCTTTTTGGGCTCCTTGGCTTCACATATTCCTTGTTGGCACCTCTAATTATGCCTTTCCTACTTGTATATTTTTTTGTCGGCTACATTTTCTATCGGAATCAGTTGTTGAAGGTATACTCACCTAGATTTGAGACTGCTGGCCAGTTTTGGCCAATCGTGCACAACTGTACAATATTTTCTCTGGTTTTCATGCAAATAATTGCAATAGGAATATTTGGAGTAAAGAAGCTTCCCTTTGCTTCTGGCTGGGTAATACCAATGACTGTGATTACTCTTTTATTTAACGACTACTGCAGGAAACGTTTTTTGCCTATATTCAACAGATACCCTGCAGAGA

Fln Alignment:

Contig11014___ASRIVQSSNPMLWVTEPAPEPRDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLIPVTLVQGLTQLTELEAFLPFLKKVLKITIVGDIVTGYLPSLILQMFLFIVPPIMMLFAAMRGYISNGGKMKSACIMMVYFTIWNVFFATVLSGSVISQINTFISNPKDIPRRLAVAVPGQATFFIAYVLTSGWTGLSLEIARLFPLITNFLTRHXXXXXXXXXXXXAPLFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQLLKVYSPRFETAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKLPFASGWVIPMTVITLLFNDYCRKRFLPIFNRYPAE
B8LKM0__________________ASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTFVQGLTQLTELESFLPFLKKVLKLTIVSDIITGYLPSLILQMFQYFVPPIMLLFSAMRGHISNSGKMKSACIMVLSFTIWNVFFATVLSGSVISQINTFLSDPKDIPRQLAVVVPGQATFFITYVLTSGWTGLSLEIARIFPLIGNFFIRH--FSNITEDADCAPSFPYHRDIPKVLLFGLLGFTYSLLAPLIMPFLLVYFFVGYIFYRNQMLKVYSPRFESAGQFWPIVHNCTIFSLVFMQIIAIGIFGVKKVPFASGWVIPMTVITLLFNDYCRKRFLPIFNRYPAE

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
3	33			66	0.997452
4	33	66			0.997452
7		66		33	0.997452
57	33		66		1.0
283		33	66		0.997452
285	66			33	0.997452
286	66			33	0.997452
423	33	66			0.997452
603	25	75			0.996473
604	25	75			0.996473
607			25	25	0.995533
791	16	83			0.994512
793	83			16	0.994512
813	20	80			0.995493
904	66	33			0.997452
906	66			33	0.997452
907	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain