SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11002

Length: 651 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11002 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15521	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	lysophospholipase 2 [Arabidopsis thaliana] gb\|AAG52273.1\|AC019018_10 putative lipase; 20450-21648 [Arabidopsis thaliana] gb\|AAK96768.1\| putative lipase [Arabidopsis thaliana] gb\|AAP42742.1\| At1g52760 [Arabidopsis thaliana] gb\|AEE32849.1\| lysophospholipase	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lysophospholipase.	EC:3.1.1.5	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	79%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	79%
Blast2go	response to zinc ion	GO:0010043	Biological Process	79%
Blast2go	lysophospholipase activity	GO:0004622	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
76	33		66		0.997452
84	33	66			0.997452
112		66		33	0.997452
116	66		33		0.997452
264		20		80	0.995493
520	16	83			0.994512
522	16	83			0.994512
523			83	16	0.994512
524	83			16	0.994512
596	25		75		0.996473
597			75	25	0.996473
598	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain