SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11000

Length: 500 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11000
AGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAGATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGTAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACC

Ace file of the UniGene biog3_v1.0_unigene11000 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3294	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Altered response to gravity (Arg1), plant, putative n=1 Tax=Ricinus communis RepID=B9S2J6_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	altered response to gravity	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	80%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	80%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	80%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	80%
Blast2go	Golgi stack	GO:0005795	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNA2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 32 aas, your sequence is shorter than subject: 82 - 158

Fln protein: MPGASGAFRGENGVDEFRRDPYEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAVTVQGNNLFLWYSVGSSKAPSI*

Protein Length: 83

Fln nts: AGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAG_-_ATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGTAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACC

Fln Alignment:

Contig11000___YEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAVTVQ
A9NNA2__________________YSILGVNKDSSSAEIRSAYRKLAMKWHPDKWSTDPSSSETVK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
312			75	25	0.996473
313	75		25		0.996473
460		20	80		0.995493
462	80			20	0.995493
463			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain