SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10988

Length: 2216 nt

UniGene Fasta

>biog3_v1.0_unigene10988
AAGGGATGTTTGCTCTGGCTGTTGCAGTAAGAACACTTCCATATTATGCCAACTATTTTGGGACTCCTTACCCCCTGCCAAAGCTGGATATGGTTGCTATACCTGATTTTCCTGCTGGGGCAATGGAGAACTATGGTCTGGTTACATATCGGGAAACTGCTTTGCTATATGATGAGAAGCATTCTGCGGCCGCAAATAAGCAAAGGGTTGCAGTTGTTGTGGCACATGAATTAGCACATCAGTGGTTTGGAAATTTGGTTACGATGGAATGGTGGACTCACCTATGGCTGAATGAGGGGTTTGCGACTTGGGTTAGCTATTTGGCAGTGGATTACCTATTTCCTGAGTGGAAAATATGGACTCAATTTATTGATGAAACAGTGGAGGCTTATAGGTTGGATGGGCTAGTTGAGTCACATCCTATTGAGGTGGAGGTGGGTCATGCCCGTGAAATTGATGAGATTTTTGATGCTATAAGCTACAGAAAGGGAGCATCTATTATCCGTATGCTCGAAAGCTACATTGGAGCTTCTGTTTTCCAGAAAGGTCTCACTGCTTACGTGAAAAGATATGCTTGGAAAAATGCAAGGACTGAAGATTTATGGGCTGTCCTTTCAGAAGTTTCAGGAGAGTCTGTGAATGAACTAATGGACTCCTGGACAAAGCAAAAGGGATATCCAGTGGTTTCTGCTAAGCTCAAGGGGGACAAATTGGAGTTAGACCAGACCCAGTATTTGTCAAGTGGAAAACCTGGGAATGGGCATTGGGTTATCCCTATCACATTATGCTATGGTTCATACAATGCCCGTAAAAATGCACTTTTACGTGAAAAACTTGGAAGCATCAGCCTGTCAGGGATAGCGGATTCCCAAGAGGATGCAGGTTCCCAACCAAGCTGGGTGAAACTAAATGTTGGACAGACTGCTTTTTATCGTGTACAATATGATGATGAGCTTGCAAAAAGACTAAGGTCTGCGATAGGAGCAGGATCTTTGGATGCTACAGATAGGTTTGGCATTTTGGATGACACATATGCATTATGCTCTGCCTGCAAGCAGCCATTATCAGCTTTACTTTCTCTGATGGATGCATACAGAAACGAGCTTGACTATTCCGTGTTATCGTGCTTAATTGATATCGCTTATAAAGTTTCTAGTGTGGTTGGTGATGCTATCCCTCAGTCAGCTGCTGATTTTAAATTGTTCACTATCAATCTTCTTCAGTTTGCAGCTGAGAAACTGGGCTGGGAGCCTATTCCAGGTGAGAGTCACTTGAACGCAATGTTAAGAGGGCAGATATTGGTAGTCTTAGCTGAGTTTGGGCACGAAGAAACTAAAGTAGAAGCGAGAAGACGATTCAATATTTTCTTGAATGACAGAAGTACAACAATTCTACCTGCAGACATCAGAAAGGCTGCATACATAGCTGTCATGCAGAATGTCACAACCTCAGATAAATCTGGCTATGAATCTCTGTTGAGAATTTTCAGGGAGACAGATCTAAGTCAAGAAAAAGTTCGCATTTTAGGTTCAATTGCATCATCTCCAGATCCTTCTGTTGTCCGTGAAGCGCTAGACTTCAGTTTGTCTTCTGAGGTGCGGAGCCAAGATGCGGTCTCTGTACTTAATGGAATTAACAAAGACGGACGTGAGACTGCCTGGCTGTGGTTAAAGGAAAAGTGGGACTTTATCTGGAAAAATTGGGGTCCAGGATCTTTTGTAACTCCTTTCATCAATTCTGTTGTATCTAAGTTTTCAAGTGAGGAAAAGGCAGATGAAATAAAGGAATTCTTTTCAACCCGAATGCAACCATCGATTGAACGCACAGTTAATCAGAGCATTGAACGAGTTCGGATCAAGGCCCAATGGGTGAAGCATGTTCAGCAGCAGGATGGCTTAGTGGAACTACTGCAGGAACTAGCAGTCTGAAAGTATCTAGCTTACCACTTCCATGCTATGACTGGTTTATGTCATGATTTTCATCGCAATTTCCTTGGTCATCAGAGCATGAATGTTAGGCATTTAATGATTTAAATAAGGCATATTTGATTCTGGATTCGAGTCTTTACGCAAATTTATAAAGTTATTTACTTAAAATGAAATCAAGTCTTATTTGGGGTACTATTGGTAAAGATAGGCATCATGGAATTATATTCATTGCAAATATGTTGCGACGCCATGTAGATGGACCATGATTATCAGGGCATGTGCCTTGAC

Ace file of the UniGene biog3_v1.0_unigene10988

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17648	5/72
SustainPine v2.0	sp_v2.0_unigene18433	65/72
SustainPine v2.0	sp_v2.0_unigene78685	1/72

Source	Descriptions	Term	Type	Identity
AutoFact	aminopeptidase M1 [Arabidopsis thaliana] gb\|AAL38379.1\| AT4g33090/F4I10_20 [Arabidopsis thaliana] gb\|AAN41401.1\| aminopeptidase M [Arabidopsis thaliana] gb\|AAO64746.1\| At4g33090/F4I10_20 [Arabidopsis thaliana] dbj\|BAE99157.1\| aminopeptidase like protein [	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	puromycin-sensitive aminopeptidase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	0.0	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB1

Fln msg: your sequence is shorter than subject: 642 - 871

Fln protein: GMFALAVAVRTLPYYANYFGTPYPLPKLDMVAIPDFPAGAMENYGLVTYRETALLYDEKHSAAANKQRVAVVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAVDYLFPEWKIWTQFIDETVEAYRLDGLVESHPIEVEVGHAREIDEIFDAISYRKGASIIRMLESYIGASVFQKGLTAYVKRYAWKNARTEDLWAVLSEVSGESVNELMDSWTKQKGYPVVSAKLKGDKLELDQTQYLSSGKPGNGHWVIPITLCYGSYNARKNALLREKLGSISLSGIADSQEDAGSQPSWVKLNVGQTAFYRVQYDDELAKRLRSAIGAGSLDATDRFGILDDTYALCSACKQPLSALLSLMDAYRNELDYSVLSCLIDIAYKVSSVVGDAIPQSAADFKLFTINLLQFAAEKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNIFLNDRSTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVSVLNGINKDGRETAWLWLKEKWDFIWKNWGPGSFVTPFINSVVSKFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELAV*

Protein Length: 643

Fln nts: AAGGGATGTTTGCTCTGGCTGTTGCAGTAAGAACACTTCCATATTATGCCAACTATTTTGGGACTCCTTACCCCCTGCCAAAGCTGGATATGGTTGCTATACCTGATTTTCCTGCTGGGGCAATGGAGAACTATGGTCTGGTTACATATCGGGAAACTGCTTTGCTATATGATGAGAAGCATTCTGCGGCCGCAAATAAGCAAAGGGTTGCAGTTGTTGTGGCACATGAATTAGCACATCAGTGGTTTGGAAATTTGGTTACGATGGAATGGTGGACTCACCTATGGCTGAATGAGGGGTTTGCGACTTGGGTTAGCTATTTGGCAGTGGATTACCTATTTCCTGAGTGGAAAATATGGACTCAATTTATTGATGAAACAGTGGAGGCTTATAGGTTGGATGGGCTAGTTGAGTCACATCCTATTGAGGTGGAGGTGGGTCATGCCCGTGAAATTGATGAGATTTTTGATGCTATAAGCTACAGAAAGGGAGCATCTATTATCCGTATGCTCGAAAGCTACATTGGAGCTTCTGTTTTCCAGAAAGGTCTCACTGCTTACGTGAAAAGATATGCTTGGAAAAATGCAAGGACTGAAGATTTATGGGCTGTCCTTTCAGAAGTTTCAGGAGAGTCTGTGAATGAACTAATGGACTCCTGGACAAAGCAAAAGGGATATCCAGTGGTTTCTGCTAAGCTCAAGGGGGACAAATTGGAGTTAGACCAGACCCAGTATTTGTCAAGTGGAAAACCTGGGAATGGGCATTGGGTTATCCCTATCACATTATGCTATGGTTCATACAATGCCCGTAAAAATGCACTTTTACGTGAAAAACTTGGAAGCATCAGCCTGTCAGGGATAGCGGATTCCCAAGAGGATGCAGGTTCCCAACCAAGCTGGGTGAAACTAAATGTTGGACAGACTGCTTTTTATCGTGTACAATATGATGATGAGCTTGCAAAAAGACTAAGGTCTGCGATAGGAGCAGGATCTTTGGATGCTACAGATAGGTTTGGCATTTTGGATGACACATATGCATTATGCTCTGCCTGCAAGCAGCCATTATCAGCTTTACTTTCTCTGATGGATGCATACAGAAACGAGCTTGACTATTCCGTGTTATCGTGCTTAATTGATATCGCTTATAAAGTTTCTAGTGTGGTTGGTGATGCTATCCCTCAGTCAGCTGCTGATTTTAAATTGTTCACTATCAATCTTCTTCAGTTTGCAGCTGAGAAACTGGGCTGGGAGCCTATTCCAGGTGAGAGTCACTTGAACGCAATGTTAAGAGGGCAGATATTGGTAGTCTTAGCTGAGTTTGGGCACGAAGAAACTAAAGTAGAAGCGAGAAGACGATTCAATATTTTCTTGAATGACAGAAGTACAACAATTCTACCTGCAGACATCAGAAAGGCTGCATACATAGCTGTCATGCAGAATGTCACAACCTCAGATAAATCTGGCTATGAATCTCTGTTGAGAATTTTCAGGGAGACAGATCTAAGTCAAGAAAAAGTTCGCATTTTAGGTTCAATTGCATCATCTCCAGATCCTTCTGTTGTCCGTGAAGCGCTAGACTTCAGTTTGTCTTCTGAGGTGCGGAGCCAAGATGCGGTCTCTGTACTTAATGGAATTAACAAAGACGGACGTGAGACTGCCTGGCTGTGGTTAAAGGAAAAGTGGGACTTTATCTGGAAAAATTGGGGTCCAGGATCTTTTGTAACTCCTTTCATCAATTCTGTTGTATCTAAGTTTTCAAGTGAGGAAAAGGCAGATGAAATAAAGGAATTCTTTTCAACCCGAATGCAACCATCGATTGAACGCACAGTTAATCAGAGCATTGAACGAGTTCGGATCAAGGCCCAATGGGTGAAGCATGTTCAGCAGCAGGATGGCTTAGTGGAACTACTGCAGGAACTAGCAGTCTGA___AAGTATCTAGCTTACCACTTCCATGCTATGACTGGTTTATGTCATGATTTTCATCGCAATTTCCTTGGTCATCAGAGCATGAATGTTAGGCATTTAATGATTTAAATAAGGCATATTTGATTCTGGATTCGAGTCTTTACGCAAATTTATAAAGTTATTTACTTAAAATGAAATCAAGTCTTATTTGGGGTACTATTGGTAAAGATAGGCATCATGGAATTATATTCATTGCAAATATGTTGCGACGCCATGTAGATGGACCATGATTATCAGGGCATGTGCCTTGAC

Fln Alignment:

Contig10988___GMFALAVAVRTLPYYANYFGTPYPLPKLDMVAIPDFPAGAMENYGLVTYRETALLYDEKHSAAANKQRVAVVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAVDYLFPEWKIWTQFIDETVEAYRLDGLVESHPIEVEVGHAREIDEIFDAISYRKGASIIRMLESYIGASVFQKGLTAYVKRYAWKNARTEDLWAVLSEVSGESVNELMDSWTKQKGYPVVSAKLKGDKLELDQTQYLSSGKPGNGHWVIPITLCYGSYNARKNALLREKLGSISLSGIADSQEDAGSQPSWVKLNVGQTAFYRVQYDDELAKRLRSAIGAGSLDATDRFGILDDTYALCSACKQPLSALLSLMDAYRNELDYSVLSCLIDIAYKVSSVVGDAIPQSAADFKLFTINLLQFAAEKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNIFLNDRSTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVSVLNGINKDGRETAWLWLKEKWDFIWKNWGPGSFVTPFINSVVSKFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELA
B8LRB1__________________GMFALDVAVRTLPYYAEYFGTPYPLPKLDMVAIPDFSAGAMENYGLVTYRETALLYDEQHSAAANKQRVAIVVTHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADYLFPEWKIWTQFMDQTVDAFRLDGLVGSHPIEVEVGHAREIDEIFDAISYEKGASIIRMLESYIGASVFQKGLNAYVKRYAWKNARTEDLWAVLSEESEESVNELMDSWTKQKGYPVVFAKLKGDKLELEQSQYLSSGKLGHGHWVIPVTLCYGSYSARKNALLREKLGSVSLPGIADSQKDVGSQPSWIKINVGQTAFYRVQYDDELAKRLRSAIEAGFLDATDRFGILDDTYALCSACKQPLSALLSLMDVYRQELDYSVLSCLIDIAYKVSSVVSDAIPQSAADFKSFTINLLQFAAEKLGWDPIPGESHLNAMLRGQILEVLAQFGHEETKVEARRRFNSFLNDRSTTLLPADIRKAAYIAVMQNVTSSDKSGYESLLRIFRETDLSQEKVRILGSIALSPDSSVVREALDFSLSSEVRNQDALFVLRGISKEGRETAWLWLKEKWEFILKKLGTGSLITRFITSVASPFSSEKKADEIEEFFSTRMQPSIERTVNQTIEQVQIRAQWVKHMQQQDGLVELLRELA

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
239	85		14		0.993533
259	16			83	0.994512
260		16	83		0.994512
261	16		83		0.994512
362		20	80		0.995493
364		80		20	0.995493
450		75		25	1.0
455	87	12			0.992554
487	16		83		0.994512
556		75		25	0.996473
564	25		50	25	1.0
565		25	25	50	1.0
568	50			50	1.0
569	50			50	1.0
1384	40		60		1.0
1462		77	11	11	0.968132
1466	12	87			0.992554
1467		12		87	0.992554
1470			87	12	0.992554
1489	14			85	0.993533
1492			85	14	0.993533
1493			85	14	0.993533
1542	28			71	1.0
1543	28	71			1.0
1569			85	14	0.993533
1604	14		85		0.993533
1606			85	14	0.993533
1607		85		14	0.993533
1617	33		66		1.0
1620	12			87	0.992554
1621	12	37		50	1.0
1626		85	14		0.993533
1629	42			57	1.0
1631		16		83	0.994512
1632	33		66		1.0
1633		16	83		0.994512
1635	83			16	0.994512
1646		40	60		1.0
1665		75		25	0.996473
1753	66	33			1.0
1797	16			83	0.994512
1800	83			16	0.994512
1801		83		16	0.994512
1811	80			20	0.995493
1812		80		20	0.995493
1817			75	25	0.996473
1861	83		16		0.994512
1862		16	83		0.994512
1896		14		85	0.993533
1926	87			12	0.992554
1954	12	87			0.992554
1964		87		12	0.992554
2088	16			66	0.988813
2089	66	16		16	0.988813
2090	33			66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain