SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10971

Length: 865 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10971 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25177	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	NADH dehydrogenase (ubiquinone) Fe-S protein 4 [Arabidopsis thaliana] sp\|Q9FJW4.1\|NDUS4_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial; AltName: Full=Protein FROSTBITE1; Flags: Precursor dbj\|BAB08467.1\| unnamed pr	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nadh dehydrogenase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferric-chelate reductase.	EC:1.16.1.7	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to osmotic stress	GO:0006970	Biological Process	86%
Blast2go	cold acclimation	GO:0009631	Biological Process	86%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	86%
Blast2go	ferric-chelate reductase activity	GO:0000293	Molecular Function	86%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial	IPR006885	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
190	25		75		0.996473
193	75		25		0.996473
252	25		75		0.996473
257	83			16	0.994512
258	16	66	16		0.988813
297	16		83		0.994512
298		16		83	0.994512
572		66		33	0.997452
628	33			66	0.997452
685		75		25	0.996473
686		75		25	0.996473
712	25			75	0.996473
714		75	25		0.996473
715		75		25	0.996473
792	25		75		0.996473
793			75	25	0.996473
794	75			25	0.996473
802	20		80		0.995493
804			80	20	0.995493
805	80		20		0.995493
806		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain