SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10969

Length: 901 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10969

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11469	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	Electron transporter, putative n=1 Tax=Ricinus communis RepID=B9SPX9_RICCO	-	-	55%
FL-Next	tr=Electron transporter, putative; Ricinus communis (Castor bean).	-	-	50%
Blast2go	uncharacterized protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Glycoside hydrolase, family 47	IPR001382	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Protein of unknown function DUF179	IPR003774	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
301	20	80			0.995493
303		80		20	0.995493
305	20			80	0.995493
309	80			20	0.995493
372		80		20	0.995493
385	20	80			0.995493
386	80			20	0.995493
387	80		20		0.995493
388		80		20	0.995493
464	14	85			0.993533
465	85			14	0.993533
467			85	14	0.993533
495	12	87			0.992554
496	12	87			0.992554
498			12	87	0.992554
506	87			12	0.992554
507	87			12	0.992554
511		14		85	0.993533
512	14		85		0.993533
514			85	14	0.993533
596	20		80		0.995493
599		80		20	0.995493
608	20	80			0.995493
610			80	20	0.995493
612		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain