SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10966

Length: 1313 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10966 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1064	26/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[C] COG0584 Glycerophosphoryl diester phosphodiesterase	-	-	8.0e-21	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	0.0	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	65%
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	65%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	65%
Blast2go	anchored to membrane	GO:0031225	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKP2

Fln msg: STOP codon was not found. Distance to subject end: 187 aas, your sequence is longer than subject: 437 - 399

Fln protein: FSVDFTFEQILSNVSAKQSFTSRPDMFDGLPLLPVEGVDSLGPPALWLNAQYSMFFEDHKLSMIQYVLSTAKSVILDYISSPEVDFLRKVRLGLRKRNSKLVLRFLDKEDIEPSTNQTYGIILKNLTFVKSFASGILVPKNYIWPLDDSLYLQTPTTLVQDAHKAGLEVYASDFANDEYDMSYNYSYDPVREYLQFLDNTDFAVDGVLTDFSVTASEAIACYAHGRKNLSSTAGKPLIISHNGASGDFPGCTDIAYQSAIQDGADYIDCSVQMTKDGVPICREDPDLLISTNVLSDSSFYPARQKKVSDIQATEGIFTFDLTWKEIQGLKPQIYSPFGKDGYGLYRNPSNMYHGKFMTLSDFLELGKGEGNVGILVDIQNARYLASKRGLDVTSAVVGALKKAGYDKMTERVLIQSDDSTVLRKLRQNTTGYKHIYI

Protein Length: 438

Fln nts: GGTTTTCTGTTGACTTTACGTTTGAACAAATCTTGAGTAACGTTTCTGCAAAACAGTCATTTACATCCCGACCTGATATGTTTGATGGCTTGCCATTGCTTCCTGTAGAAGGTGTGGACAGTTTAGGTCCACCTGCACTTTGGTTGAACGCACAGTATTCTATGTTTTTCGAGGACCACAAACTAAGCATGATACAGTATGTGCTATCCACAGCGAAATCTGTTATCCTGGACTATATCTCTTCGCCAGAGGTGGATTTCTTGAGGAAAGTAAGACTAGGACTCCGGAAGAGAAATTCAAAGTTGGTATTGAGGTTCCTTGACAAAGAAGATATTGAACCATCAACAAACCAAACATATGGCATTATTCTGAAAAATTTGACATTTGTGAAGAGCTTTGCTTCTGGAATTCTAGTTCCAAAGAATTACATTTGGCCACTTGATGACAGTTTATATTTGCAAACTCCAACCACCCTTGTACAAGATGCTCATAAAGCAGGGCTGGAAGTTTATGCTTCTGATTTTGCCAACGATGAATATGATATGAGTTACAACTATAGCTATGATCCAGTCAGAGAGTATTTACAGTTCCTGGACAACACTGATTTTGCAGTAGATGGTGTGCTAACAGATTTCTCTGTAACAGCATCGGAGGCAATAGCTTGCTATGCCCACGGAAGGAAAAATTTATCATCCACTGCAGGAAAACCACTTATTATCTCGCACAATGGAGCAAGTGGGGACTTCCCAGGTTGTACAGATATTGCTTATCAAAGTGCGATACAAGATGGCGCTGACTACATTGACTGCAGTGTTCAGATGACAAAAGACGGTGTCCCTATCTGTAGGGAAGACCCGGATTTATTGATAAGCACAAATGTGCTTTCTGATTCATCATTTTATCCTGCTCGTCAGAAGAAAGTTTCTGATATTCAAGCTACCGAAGGAATTTTTACATTTGATCTTACATGGAAGGAAATTCAAGGCTTAAAACCACAAATTTATAGCCCATTTGGCAAAGATGGGTATGGTTTATATCGGAATCCTTCGAATATGTACCATGGGAAATTCATGACATTATCTGATTTCCTTGAGTTAGGAAAGGGTGAAGGCAATGTTGGCATTCTTGTTGACATACAGAATGCACGATACCTAGCGTCAAAACGGGGCCTTGATGTTACAAGCGCAGTTGTAGGTGCCTTAAAAAAGGCCGGCTATGATAAGATGACTGAACGAGTGCTTATCCAATCTGATGACAGTACAGTTCTGCGGAAGTTGAGGCAAAATACCACTGGTTATAAGCACATTTACATT

Fln Alignment:

Contig10966___TNQTYGIIL--KNLTFVKSFASGILVPKNYIWPLDDSLYLQTPTTLVQDAHKAGLEVYASDFANDEYDMSYNYSYDPVREYLQFLDNTDFAVDGVLTDFS
B8LKP2__________________TDQSYWEITSDKYFDFIKKYVVGIGPWKDTIVPPDSRNYLTTPTDLVAKAHAHDLQVHPYTYRNENVFLHFNFHEDPYAEYEYWI--KVIGVDGLFTDFT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
339	20	80			0.995493
340	20	80			0.995493
342			25	75	0.996473
343		75		25	0.996473
562	75			25	0.996473
563		75		25	0.996473
769	12	75		12	0.975346
772	87		12		0.992554
846		28		71	1.0
870	14	85			0.993533
873		85	14		0.993533
874	85			14	0.993533
936	85	14			0.993533
954	20	80			0.995493
958	80			20	0.995493
971	20			80	0.995493
972		20	80		0.995493
975			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain