SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10965

Length: 1230 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10965

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4955	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AAF88161.1\|AC026234_12 Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi\|212530 [Arabidopsis thaliana] gb\|ABE02413.1\| At1g20	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	prolyl 4-hydroxylase subunit alpha-2-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	L-ascorbic acid binding	GO:0031418	Molecular Function	88%
Blast2go	iron ion binding	GO:0005506	Molecular Function	88%
Blast2go	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-
Sma3	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVS8

Fln msg:

Fln protein: MKKMAKGGRPKSISGRSTFTLVLTMLLMLSIVLLMLLALGIVSLPVNSRAPDEIGHGGAHSEHLEGKRLQETASDGMDEPRQWAEVLSWEPRAILYHNFLSKEECEYLITLAKPHMAKSTVVDSATGKSKDSRVRTSSGTFLNRGQDKIIRNIEKRIADFTFIPAEHGEGLQVLHYEVGQKYEPHFDYFLDEFNTKNGGQRIATVLMYLSDVEKGGETVFPASKVNSSSVPWWDELSECAKAGISVRPRMGDALLFWSMRPDADLDPSSLHAGCPVIQGDKWSATKWMHVEEYKV*

Protein Length: 297

Fln nts: AATGTA_-_ATGAAAAAAATGGCCAAAGGTGGGAGACCGAAATCGATCTCGGGCAGATCCACGTTTACCCTGGTGCTTACAATGCTTCTCATGTTGTCAATAGTCCTGTTAATGCTGTTGGCGCTTGGGATTGTTTCGCTGCCGGTCAACAGCCGAGCTCCGGACGAGATCGGACATGGAGGCGCACACTCTGAACATTTGGAGGGGAAGAGACTTCAAGAGACAGCCAGTGATGGAATGGATGAACCAAGGCAATGGGCTGAAGTTCTTTCATGGGAGCCCCGCGCCATCTTATACCATAACTTTCTGAGTAAGGAGGAGTGTGAATATCTAATTACTCTTGCAAAACCACACATGGCGAAGTCAACTGTTGTGGATAGCGCAACGGGGAAAAGCAAAGATAGCAGAGTTCGTACAAGCTCTGGAACTTTTCTGAACCGAGGACAAGATAAAATTATACGAAATATTGAGAAAAGAATTGCAGATTTCACCTTCATCCCAGCAGAACATGGGGAAGGGCTCCAAGTTCTTCATTATGAGGTTGGGCAGAAATATGAACCTCACTTTGACTACTTCCTTGATGAGTTCAATACCAAGAATGGGGGGCAGCGGATAGCTACAGTTCTTATGTACCTTTCGGATGTGGAAAAAGGTGGTGAGACTGTGTTTCCTGCATCCAAAGTAAATAGTAGCTCCGTTCCTTGGTGGGATGAGTTATCAGAATGTGCCAAAGCTGGTATCTCTGTGAGACCAAGAATGGGAGATGCTTTACTCTTTTGGAGTATGAGACCTGATGCTGACTTGGATCCATCAAGTTTACATGCTGGTTGTCCAGTCATTCAGGGTGATAAGTGGTCAGCCACAAAATGGATGCATGTTGAGGAGTACAAGGTTTGA___TGTGGCATTCAAAGGTGTTGAGAATTGAAGCATTTGCAAGAATTCTTCACCATCAATACAAATTATGGAAAATGTTCTGGAAATATCCGTTACCTCCTCTATAATTTGAACAAAATATGGAGCTGAGCTCAAATTATGTTGTACAGTTTTGACTAGAATTAAGGTGATCAAGTGGTCCATAGATGCAGAGTTGGGATCAACTTTTGAGGCGAAGTATTTTTTATGGTAAACATCCTATGTCTAAATCATCTCATCGAGCGAAGGAATTGGGCTACTCGTGCTGATAAGTTTTGGAGATATCATTACTTTTAATTAATTGTGCAAGAATATAATGTC

Fln Alignment:

Contig10965___MAKGGRPKSISGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVNSRAPDEIGHGGAHSEHLEGKRLQETASDGMDEPRQWAEVLSWEPRAILYHNFLSKEECEYLITLAKPHMAKSTVVDSATGKSKDSR-----------VRTSSGTFLNRGQDKIIRNIEKRIADFTFIPAEHGEGLQVLHYEVGQKYEPHFDYFLDEFNTKNGGQRIATVLMYLSDVEKGGETVFPASKVNSSSVPWWDELSECAKAGISVRPRMGDALLFWSMRPDADLDPSSLHAGCPVIQGDKWSATKWMHVEEYKV
A9NVS8__________________MAKGGRPKSISGRSTFTLVLTMLLMLSIVLLMLLALGIVSLPVNSRAPDEISNGGVYSEHSGGKKLQETYSNGMDEPKQWAEVLSWEPRAILYHNFLNKEECEYLINLAKPHMAKSTVVDSATGKSKDSRFVHRWKSNDSRVRTSSGMFLNRGQDKTIRSIEKRIADFTFIPAEHGEGLQVLHYEVGQKYEPHFDYFLDEFNTKNGGQRIATVLMYLSDVEKGGETVFPASKVNSSSVPWWDELSECAKAGISVRPRMGDALLFWSMRPDAELDPSSLHAGCPVIQGDKWSATKWIHVGEYKV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
404		25	75		0.996473
406			75	25	0.996473
439	25		75		0.996473
440			75	25	0.996473
441	75		25		0.996473
442		75		25	0.996473
483	33			66	0.997452
484	33			66	0.997452
486		66	33		0.997452
487	66			33	0.997452
657	20		80		0.995493
658	80			20	0.995493
659		80	20		0.995493
728	85	14			0.993533
731		85		14	0.993533
746		16	83		0.994512
748		83		16	0.994512
749		83		16	0.994512
805	20	80			0.995493
809		80		20	0.995493
1112	25			50	0.995533
1113		25		75	0.996473
1114	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain