SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10939

Length: 533 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10939
GAGATGGAAAGAGGAATGAACATCGCACCGCTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGCAAAGTTGGCTATAGATACATTGCAAAATGAATCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCGAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGATTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGTTTTTTCACGAGGTTTTGTACACCAA

Ace file of the UniGene biog3_v1.0_unigene10939 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27546	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0016 protein 3 [Arabidopsis thaliana] ref\|NP_851098.1\| UPF0016 protein 3 [Arabidopsis thaliana] sp\|Q93Y38.1\|GDT13_ARATH RecName: Full=GDT1-like protein 3; Flags: Precursor gb\|AAK96668.1\| transmembrane protein FT27/PFT27-like [Arabidopsis thaliana] gb\|A	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	membrane protein	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSR6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 86 aas, your sequence is shorter than subject: 177 - 302

Fln protein: RWKEE*TSHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKISHKKEMEEVEEKLESGAGKTTFRRFFTRFCTP

Protein Length: 178

Fln nts: GAGATGGAAAGAGGAATGAACATCGCACCGCTCGTCCAACAACTTGGTAAAGTTGCCATGGCGCAAGGCAAAGTTGGCTATAGATACATTGCAAAATGAATCTGTTATGGAGCAGAGTGATGTGAAGGCCGTTTCAGTATCAGATGGACTGGGCATTTTTGATGCATTTTTTGCAAGCTTGTCGATGATTCTTGTCAGTGAGATTGGAGATGAGACATTCATCATTGCAGCACTTATGGCAATGCGCAATCCGAAGTCAATTGTTTTGTCTGGTGCTCTTAGTGCCCTTTTTGTGATGACAGTGCTATCTACTGCATTGGGAAGGATAGTTCCAAATTTGATATCGAGAAAACACACAAATAGGGCAGCTACAGTTTTATATGCTTTTTTTGGCCTGCGTTTACTTTACATAGCTTGGAGGTCTGATGCAAAGATTTCACATAAAAAGGAGATGGAGGAGGTGGAAGAAAAACTGGAAAGTGGAGCAGGAAAAACAACATTTCGCCGTTTTTTCACGAGGTTTTGTACACCAA

Fln Alignment:

Contig10939___SHRSSNNLVKLPWRKAKLAIDTLQNESVMEQSDVKAVSVSDGLGIFDAFFASLSMILVSEIGDETFIIAALMAMRNPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKISHXXXXXXXXXXXESGAGKXXXXXXXXXFCTP
A9NSR6__________________SHRSSNDLVKLPWRKAKLAIDPLQNDSVMEQSDVKAASVSDGQGIFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALFVMTVLSTALGRIVPNLISRKHTNRAATVLYAFFGLRLLYIAWRSDAKNSQKKEMEEVEEKLENGAGKTTFRRFFSRFCTP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
438		40		60	1.0
453		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain