SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10927

Length: 277 nt

UniGene Fasta

>biog3_v1.0_unigene10927
AAGTGGGTGGCAAATACGATGCATGGATTCTGGTAATACACATAGTGTATGTGGTGCAGATGATTCAGTTATTGGCTTTGGCACATCCCAGTATGGAGAACTCGGATTCGGCCCACTTGGCCCAAAGTCATCCGCAAATCCGAAGAAGATTGATATTCTTGAAGGAATGCACGCGATCAGTGTTACTTGTGGTATTGGACACTCCCTTATAGTGGTTGATCGAACGAATATGGGCGATCGAATAGAAAAGCTTGATGTATATGACGGCTCGAGTCCC

Ace file of the UniGene biog3_v1.0_unigene10927

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3500	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Protein RCC2, putative n=1 Tax=Ricinus communis RepID=B9R853_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	67%
Blast2go	regulator of chromosome condensation family protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	79%
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B4FG31

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 92 - 229

Fln protein: SGWQIRCMDSGNTHSVCGADDSVIGFGTSQYGELGFGPLGPKSSANPKKIDILEGMHAISVTCGIGHSLIVVDRTNMGDRIEKLDVYDGSSP

Protein Length: 93

Fln nts: AAGTGGGTGGCAAATACGATGCATGGATTCTGGTAATACACATAGTGTATGTGGTGCAGATGATTCAGTTATTGGCTTTGGCACATCCCAGTATGGAGAACTCGGATTCGGCCCACTTGGCCCAAAGTCATCCGCAAATCCGAAGAAGATTGATATTCTTGAAGGAATGCACGCGATCAGTGTTACTTGTGGTATTGGACACTCCCTTATAGTGGTTGATCGAACGAATATGGGCGATCGAATAGAAAAGCTTGATGTATATGACGGCTCGAGTCCC

Fln Alignment:

Contig10927___SGWQIRCMDSGNTHSVCGADDSVIGFGTSQYGELGFGPLGPKSSANPKKIDILEGMHAISVTCGIGHSLIVVDRTNMGDRIEKLDVYDGSS
B4FG31__________________SGWNIRCMASGNMHHIVGADDSCISWGVAQNGELGYGPNGQKSSANPKKVDILEGMHVTSVGCGFGLSLIVVDRANVGDRLGQLEIYDGDT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
186	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain