SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10895

Length: 1454 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10895 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2972	28/28

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATAPRL5 (APR-like 5)	-	-	7.00649e-45	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADW9

Fln msg:

Fln protein: MAAACLIFFVLGLAPGIVLGESTLPFCPCPSLPEVAFVWPEKCMAADFGSSETPVLHPSRVSELDDASFERALDILRHRDAHMAVLFHASWCPFSKLCRSLFDDLSSMFPKIYHVAVEESVIMPSVLSRNGVHSFPSLFLQNQTSRARYRGSRDLDSLVHFYKEITGIEPNSLDPLVKEFNGFRRPSSNEGAQSMEDTPYQWEMFPKNVLQREPYLAFAILFLILRMLVYLFPKVLLQVKRCRLRRIWHVNLALLSENTPLILKHALHMLNLNRIWCRLKFSKTRNFQEGAKNARVWASLASVSLGKGPVHRPGSSCENH*

Protein Length: 322

Fln nts: TTCAACGCAGAGTACGCGGGGATTCAACCATAGCGAAGGAGGCGGGGGCAGCTTGCACAGAAATTGAGGCATTTCTTTCCAAATACAGAGTGGTCGCACAATCCATAACGGGCAACTTCATATGGCGAACACCTCCATCCTCAAACACAGGGCTCCGGATCGAATTTAAGTGGGGTCTTCATCTTTATAATTTTTACAGTTGATTGTTTTGGACTGAC_-_ATGGCTGCTGCTTGCCTTATCTTCTTCGTCCTTGGTCTGGCTCCTGGTATCGTTCTCGGAGAATCCACACTGCCCTTTTGCCCGTGCCCTTCTCTGCCTGAAGTGGCGTTTGTATGGCCGGAAAAATGCATGGCTGCTGACTTTGGGTCATCTGAAACTCCCGTTCTTCACCCTTCCAGGGTTAGTGAGCTTGATGATGCATCATTTGAAAGAGCTTTGGATATCCTACGTCATCGTGATGCCCACATGGCAGTGCTGTTTCATGCTTCATGGTGTCCATTTTCAAAGTTATGTCGATCTTTATTTGATGACCTATCTTCAATGTTTCCAAAGATCTACCATGTAGCTGTTGAGGAGTCTGTTATAATGCCCAGTGTTCTTTCAAGGAATGGAGTTCATAGTTTTCCATCCCTCTTTCTACAGAACCAGACATCAAGGGCGCGCTATCGTGGATCAAGAGACCTTGATTCACTTGTACATTTCTATAAGGAGATTACAGGTATTGAGCCCAACTCTCTAGATCCTTTGGTAAAGGAATTCAATGGTTTCAGAAGACCTTCCAGTAATGAAGGTGCTCAAAGCATGGAGGACACTCCATATCAATGGGAAATGTTTCCAAAGAATGTTCTGCAGCGGGAGCCATACCTGGCATTTGCAATTCTTTTTCTCATTTTGAGAATGCTGGTTTATCTTTTTCCAAAGGTCTTATTACAGGTCAAACGGTGTCGGTTGAGGCGTATTTGGCATGTAAATTTGGCACTCCTGAGTGAAAATACACCACTTATTTTGAAGCATGCCCTGCACATGCTCAACTTGAATAGAATTTGGTGTCGTTTAAAGTTTTCGAAGACAAGAAACTTTCAAGAAGGTGCTAAGAATGCAAGAGTATGGGCATCTCTGGCCTCTGTTTCTCTTGGTAAAGGCCCAGTACATAGACCAGGGTCCAGCTGTGAAAACCACTAA___GATCTCTGGAGGTGAACAAGGTCAGAGGTTACAGATTTTATATACAAATCAAGAGGGACAGAAGAGGTAGCTTTATTTCAACACTAGAACAATGTTCATTGAATCAAATAGCTATTGCACTTAGCATGAGAGTTTGTACTTTTTGGACAGTGTATAAGACTCATCTGTGTCTGTAGATTAGCTGCCTTTTTTGAAGTAGAATTTGGCAGGTCAAAGATGGGCGTTGAAGATTTGATTTTTCTTCCATCATGGATGTTTAATAAGATCCACATT

Fln Alignment:

Contig10895___LFWTDMAAACLIFFVLGLAPGIVLGESTLPFCPCPSLPEVAFVWPEKCMAADFGSSETPVLHPSRVSELDDASFERALDILRHRDAHMAVLFHASWCPFSKLCRSLFDDLSSMFPKIYHVAVEESVIMPSVLSRNGVHSFPSLFLQNQTSRARYRGSRDLDSLVHFYKEITGIEPNSLDPLVKEFNGFRRPSSNEGAQSMEDTPYQWEMFPKNVLQREPYLAFAILFLILRMLVYLFPKVLLQVKRCRLRRIWHVNLALLSENTPLILKHALHMLNLNRIWCRLKFSKTRNFQEGAKNARVWASLASVSLGKGPVHRPGSSCENH
D5ADW9__________________MFWTDMAAACLIFLVLGLAPGIVLGEPTLPFCPCPSLPEVALIWPEKCMAADFGSPGTPVLHPSRVSELDDVSLERTLDILRYSDAHMAVLFHASWCPFSKSCRSLFDDLSSMFPKIYHVAVEESVLMPSVLSRNGVHSFPCLFLQNQTSRVRYRGSRDLDSLVHFYKEITGIEPISLDPLAKEFNGFRRSFRNEGGQSMEDSPYPWEMSPKNVLQREPYLVFAVLFLILRMLVYLFPKVLLQVKQCRLRRIWHVNLAFLSENTPLILKHALHMLNLNRIWCRLEFSKTRNFQEGAKNARVWASLASVSLGKGPVNRPGSSSENH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
311	33	66			0.997452
314			66	33	0.997452
380	75			25	0.996473
510		88	11		0.923564
511		88		11	0.923564
637	16			83	0.994512
638		16	83		0.994512
728	25		75		0.996473
759	75		25		0.996473
825	75	25			0.996473
827			75	25	0.996473
828	75			25	0.996473
872	25	75			0.996473
943			83	16	0.994512
944	83		16		0.994512
1065	16		83		0.994512
1066		16	83		0.994512
1068	83			16	0.994512
1069			83	16	0.994512
1145	20		80		0.995493
1148			80	20	0.995493
1149	80			20	0.995493
1185		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain