SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10894

Length: 888 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10894

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21159	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	5-formyltetrahydrofolate cyclo-ligase [Arabidopsis thaliana] gb\|AAF04436.1\|AC010718_5 hypothetical protein; 41475-39805 [Arabidopsis thaliana] gb\|ABD85154.1\| At1g76730 [Arabidopsis thaliana] gb\|AEE35883.1\| 5-formyltetrahydrofolate cyclo-ligase [Arabidopsi	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	methenyltetrahydrofolate synthase domain-containing	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	5-formyltetrahydrofolate cyclo-ligase	IPR002698	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXJ0

Fln msg: Overlapping hits, possible frame ERROR between 296 and 229, your sequence is shorter than subject: 235 - 338

Fln protein: GAAAQMLGSLQAFATAKCVKVNPDSPQKQVRYLALSGGKKLLTPQPRLRTGFFSILDATTLPQGAIHEACTSAGAxxxxxxxxxxxxxxxxxxxxxxxxAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTLIITSVHDKQLVDDIPLEKLQVHDVPVDVICTPTQVIHTNTTIPKPQGIYWDILSPEKLSQIKILRELKRRIEQETGQTLPCGPSEKLPPTAERRPRRQRG*

Protein Length: 236

Fln nts: CCGGTGCTGCAGCTCAAATGTTGGGCAGCTTGCAGGCGTTTGCTACTGCGAAGTGTGTGAAGGTGAATCCTGATTCACCTCAAAAGCAAGTCCGCTATCTGGCTTTATCAGGTGGGAAAAAGCTTCTGACCCCTCAGCCACGTCTGAGAACAGGCTTCTTCTCTATTCTGGATGCTACAACTTTGCCTCAAGGAGCCATACATGAAGCTTGTACTTCAGCGGGAGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGTTGATCCCAGAACTGGTGCAAGGCTTGGGAAAGGCGAGGGGTTTGCTGAACTTGAGTATGGAATGCTGCGTTACATGGGGGCTATAGATGACTCAACTCTAATCATCACTTCAGTTCATGATAAGCAGTTGGTTGACGACATTCCTCTAGAGAAACTGCAAGTACATGATGTACCAGTGGATGTGATCTGCACTCCTACTCAAGTTATTCATACAAATACAACTATTCCAAAACCTCAAGGTATTTATTGGGACATATTATCACCTGAGAAGCTCAGTCAGATTAAAATTCTCAGGGAACTGAAAAGACGCATTGAACAAGAAACTGGTCAAACACTTCCTTGTGGGCCTTCAGAGAAGCTACCACCCACCGCTGAACGAAGACCTAGGAGGCAACGTGGATAGCCTACTAAAGAACTGCAATAAATTCCAGTGTTCAATCTTTGTTCGATTTTGCATTGATAACTTTTGTAACTTGACACCTCATATTAAGTTTATGTTGTGCAGTGTGATGCTAGATACTCTCTAACCATGGGATTTGGTTAACTGTTCAATAGATATATCGCAGCTTACATGAGCAAATACATT

Fln Alignment:

Contig10894___GAAAQMLGSLQAFATAKCVKVNPDSPQKQVRYLALSGGKKLLTPQPRLRTGFFSILDATTLPQGAIHEACTSAGAxxxxxxxxxxxxxxxxxxxxxxxAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTLIITSVHDKQLVDDIPLEKLQVHDVPVDVICTPTQVIHTNTTIPKPQGIYWDILSPEKLSQIKILRELKRRIEQETGQTLPCGPSEKLPPTAERRPRRQRG*PTKELQ
A9NXJ0__________________GAAAQMLAGLQAFATAKCVKVNPDSPQKQVRYLALSGGKNLLTPQPRLRTGFFSILDATILPQGAIHEACTSAGAxxxxxxxxxxxxxxxxxxxxxxxAVDPRTGARLGKGEGFAELEYGMLRYMGAIDDSTLIITSVHDKQLVDDIPVEKLQVHDVPVDVICTPTQVIHTNTTIPKPQGIYWDRLSPEKLGQIKILRELKKRIEQETGQTLPCGPSEKLPPTAERRLGRQRGQSTKELQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
589	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain