SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10890

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10890
AATTCATCATCAATGGTAATAATGGACTGTGGAAGTTCCCAAGAACTTCATCAACTCCTGGCAATGATAGTTTCCGGCGACGTCCGTCCCAACAGAGGAGGAGGAGAAAAGAAACAGTCATGTCAACCACGGTATCAAGCGGCACCTATAATAAGGCTATTTCTACTGAAGATCCTTTCACTGAGGGTAAACTGGATCGACCACGTTGGACCGGGAATACGCCAATCTCACGTCTTGTAGCAGCCCTGATTGCCATCAAACCTCTGTATAATCTTATGAAGCTGGGTGCCAGACAAGTTCTTATCAGTACAGCGGAGAAGAATGGAATTGCATGGAGAGATATGGCAAGGGAGATTCTGGAATCAGAAGTTTACAAGGAGATGGAACTCATCGAAGACCCTTCTGTTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAATTTATCTTGGGAGGCAGCAGCAGAGGTAGAAGCGGCGACCATGTCCATGGTGTGGCGTGCAATGCCATCTGCTGCATCTCTGG

Ace file of the UniGene biog3_v1.0_unigene10890 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3414	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CMV 1a interacting protein 1 n=1 Tax=Nicotiana tabacum RepID=Q5DT22_TOBAC	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	cmv 1a interacting protein 1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	82%
Blast2go	Tetracycline biosynthesis	00253	82%
Blast2go	Histidine metabolism	00340	82%
Blast2go	Tyrosine metabolism	00350	82%
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Tryptophan metabolism	00380	82%
Blast2go	Benzoxazinoid biosynthesis	00402	82%
Blast2go	Selenocompound metabolism	00450	82%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	82%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	82%
Blast2go	Methane metabolism	00680	82%
Blast2go	Porphyrin and chlorophyll metabolism	00860	82%
Blast2go	Carotenoid biosynthesis	00906	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Flavonoid biosynthesis	00941	82%
Blast2go	Anthocyanin biosynthesis	00942	82%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	82%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	82%
Blast2go	Insect hormone biosynthesis	00981	82%
Blast2go	Biosynthesis of type II polyketide products	01057	82%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylation	GO:0032259	Biological Process	0.0	82%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P078

Fln msg: Distance to subject end: 201 aas, atg_distance in limit (1-15): atg_distance = 8, W2: There is no M at the beginning, your sequence is shorter than subject: 179 - 387

Fln protein: FIINGNNGLWKFPRTSSTPGNDSFRRRPSQQRRRRKETVMSTTVSSGTYNKAISTEDPFTEGKLDRPRWTGNTPISRLVAALIAIKPLYNLMKLGARQVLISTAEKNGIAWRDMAREILESEVYKEMELIEDPSVVYPDYYLKPFHAYEQGNLSWEAAAEVEAATMSMVWRAMPSAASL

Protein Length: 180

Fln nts: AATTCATCATCAATGGTAATAATGGACTGTGGAAGTTCCCAAGAACTTCATCAACTCCTGGCAATGATAGTTTCCGGCGACGTCCGTCCCAACAGAGGAGGAGGAGAAAAGAAACAGTCATGTCAACCACGGTATCAAGCGGCACCTATAATAAGGCTATTTCTACTGAAGATCCTTTCACTGAGGGTAAACTGGATCGACCACGTTGGACCGGGAATACGCCAATCTCACGTCTTGTAGCAGCCCTGATTGCCATCAAACCTCTGTATAATCTTATGAAGCTGGGTGCCAGACAAGTTCTTATCAGTACAGCGGAGAAGAATGGAATTGCATGGAGAGATATGGCAAGGGAGATTCTGGAATCAGAAGTTTACAAGGAGATGGAACTCATCGAAGACCCTTCTGTTGTCTACCCAGATTATTATTTGAAGCCATTCCATGCTTACGAGCAAGGAAATTTATCTTGGGAGGCAGCAGCAGAGGTAGAAGCGGCGACCATGTCCATGGTGTGGCGTGCAATGCCATCTGCTGCATCTCTGG

Fln Alignment:

Contig10890___IINGNNGLWKFPRTSSTPGNDSFXXXXXXXXXXRKETVMSTTVSSGTYNKAISTEDPFTEGKLDRPRWTGNTPISRLVAALIAIKPLYNLMKLGARQVLISTAEKNGIAWRDMAREILESEVYKEMELIEDPSVVYPDYYLKPFHAYEQGNLSWEAAAEVEAATMSMVWRAMPSAASL
A9P078__________________IINGNNGLWQFPRTSTTPGNYSFLQRSSLQRRRRKETVMSTTVSSGTHNKAISTQVPFIEGELDRPRWSGDTPISRLVAALIAIKPVYNLMKLGARQVLISTAEKNGIAWRDMTREILESEVYKEKELIENPSIVYPDYYLKPFHAYEQGNLSWEAAAEVEAATMSMIRRAMPSAASL

SSRs (tot: 1)

Start position	End position	Sequence	Length
435	446	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain