SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10876

Length: 1759 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10876 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9917	45/47
SustainPine v2.0	sp_v2.0_unigene63590	2/47

Source	Descriptions	Term	Type	Identity
AutoFact	cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_850616.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_001189937.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] sp\|Q39085.2\|DIM_ARATH RecName: Full=Delta(24)-ster	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	cell elongation protein diminuto	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Delta(24)-sterol reductase.	EC:1.3.1.72	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Steroid biosynthesis	00100	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	response to light stimulus	GO:0009416	Biological Process	89%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	89%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	89%
Blast2go	delta24-sterol reductase activity	GO:0050614	Molecular Function	89%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAF3

Fln msg: your sequence is longer than subject: 525 - 390

Fln protein: MTYLGDVWSESKSFKRRQKEHDENVEKVIKRLKERNPSKDGLVCTARKPYIAVGMRNVDYKRARHFEVDLSEFRNILEIDKEKMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSFAPRDGDESKVPDFVEGMIYNPTEAVHMTGRYASKEEAKQKGIVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRWTLGWLMPPKVSFLKATQGDAIRNYYHEMHVIQDMLVPLYKVADALEFQHREMEVYPIWLCPHRLFQLPVKTTVYPEPGFEEAQRQGDTEYAQMYTDVGIYYTPACVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELSERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRKTEKEVQEEEQKQLDNVYVELDQPVME*

Protein Length: 526

Fln nts: AATGTCCTGTCATTCACATTCTATTTT_-_ATGACCTATTTGGGGGATGTTTGGTCTGAGAGCAAATCCTTCAAGCGTAGGCAGAAGGAGCACGACGAGAATGTGGAGAAGGTCATTAAACGTCTCAAGGAGAGAAACCCATCTAAAGATGGCCTCGTTTGCACTGCTAGAAAGCCTTATATTGCTGTGGGTATGCGCAATGTGGACTACAAGAGGGCCAGACACTTCGAGGTGGATCTGTCTGAATTCAGAAACATACTTGAAATTGACAAGGAGAAAATGATTGCGAGAGTAGAACCCCTGGTCAATATGGGTCAGATTACTAGGGTGACCGTGCCCATGAATCTGGCCCTGGCAGTGGTGGCCGAGCTGGATGATCTTACTGTTGGTGGGTTGATCAATGGGTATGGGATAGAAGGGAGTTCGCATATCTATGGGCTCTTTTCTGATACTGTTGTGGCATACGAGGTTGTGTTGGCCGATGGCCGATTAGTTAGGGCCACCAAGGATAACGAGTTTTCTGATCTTTTCTATGCAATCCCATGGTCCCAGGGTACACTTGGGCTTCTGGTAGCAGCAGAGATCAAGCTCATACCAATAAAGGAATACATGAGAGTAACCTATACGCCTGCTAGGGGTAACCTCAGGGAGTTAGCCCAGGCCTACATTGATTCCTTTGCACCCAGGGATGGAGATGAGTCCAAGGTCCCAGACTTTGTGGAGGGCATGATATATAACCCCACAGAAGCCGTGCACATGACAGGAAGATATGCCTCCAAGGAAGAAGCGAAGCAAAAGGGTATTGTTATCAACAGTGTTGGATGGTGGTTCAAGCCCTGGTTCTACCAGCACGCTCAGACTGCTCTTAAGAGAGGGGAGTTCGTTGAGTACATTCCCACTAGGGAGTACTACCACCGGCATACTCGGTGTCTCTATTGGGAGGGAAAGCTCATCTTGCCTTTCGCTGACCAATGGTGGTTCCGATGGACGTTGGGATGGCTCATGCCTCCAAAGGTCTCGTTTCTTAAGGCCACTCAGGGTGACGCTATAAGAAATTATTATCATGAAATGCATGTTATTCAGGATATGCTTGTTCCTCTGTACAAGGTCGCAGATGCGCTCGAGTTTCAGCACCGTGAGATGGAGGTATATCCTATTTGGCTGTGCCCTCATCGCCTCTTCCAACTTCCTGTGAAGACAACTGTCTACCCAGAGCCTGGTTTTGAGGAGGCGCAGAGGCAAGGTGACACAGAATATGCCCAGATGTACACAGATGTAGGCATCTATTATACTCCAGCTTGTGTCTTCCGTGGGGAGGCATTTGATGGAGCAGAAGCAGTGCGGAGAATGGAGAAATGGTTGATTGAAAATCATGGGTTTCAGCCACAATATGCTGTTTCAGAATTGAGTGAGAGAGACTTCTGGCGCATGTTTGATGGTTCACTCTACAACAGTTGCAGAGAAAAATACAGAGCCGTGGGAACTTTCATGAGTGTCTACTACAAAAGCAAGAAGGGAAGAAAGACTGAAAAGGAGGTTCAAGAGGAAGAGCAAAAGCAACTGGACAATGTATATGTCGAGTTGGACCAACCTGTGATGGAGTAA___CTACGAATGCTTGATTGAGGAGACCTTACAAATTTTATCGACAAATTCAGTTCATTTTGATTTCAAATTCTGATCCTTTTTTTCCTGTGCGTGTGGGTAAATTACCATTGGGAACAGTTAGTAGTACACAGAGCATTAGTCTCCAGGCATATACATT

Fln Alignment:

Contig10876___GLFSDTVVAYEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSFAPRDGDESKVPDFVEGMIYNPTEAVHMTGRYASKEEAKQKGIVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRWTLGWLMPPKVSFLKATQGDAIRNYYHEMHVIQDMLVPLYKVADALEFQHREMEVYPIWLCPHRLFQLPVKTTVYPEPGFEEAQRQGDTEYAQMYTDVGIYYTPACVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELSERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRXXXXXXXXXXXXQLDNVYVELDQPVME
D5AAF3__________________GSFSDTVVAFEVVLADGRLVRATKDNEFSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMRLTYMPARGNLRELAQAYIDSFAPRDGDQSKVPDFVESMIYTPTEAVHMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAQTALKRGEFVEYIPTRQYYHRHTRCLYWEGKLILPFADQWWFRWTMGWLMPPKVSFLKATQGEAIRNYYHEMHVIQDMLVPLYKVADALEFQDREMEIYPIWLCPHRLFKLPVKTTVYPEPGFEEAHRQGDTEFAQMYTDVGIYYTPAPVFRGEAFDGAEAVRRMEKWLIENHGFQPQYAVSELNERDFWRMFDGSLYNSCREKYRAVGTFMSVYYKSKKGRKTEKEVREEEQKQLDNAYAELDQPVME

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
486	25			75	0.996473
488		75		25	0.996473
489	75		25		0.996473
666	40		60		1.0
667	80			20	0.995493
668			80	20	0.995493
669			80	20	0.995493
670	80			20	0.995493
861	14	85			0.993533
863	14	85			0.993533
865	85			14	0.993533
878	16			83	0.994512
881	83			16	0.994512
882		66		33	1.0
884	80			20	0.995493
950	20	80			0.995493
957		40		60	1.0
959	60			40	1.0
960		60		40	1.0
962	66			33	0.997452
1118		83		16	0.994512
1280	14	85			0.993533
1284		85		14	0.993533
1301	33			66	1.0
1305		66		33	1.0
1355	11	88			0.923564
1359	88			11	0.923564
1427			71	28	1.0
1463	20	80			0.995493
1465			80	20	0.995493
1467			80	20	0.995493
1482	80			20	0.995493
1579	33	66			0.997452
1580	66			33	0.997452
1582		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain