SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10871

Length: 1046 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10871

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1865	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8E8

Fln msg: Overlapping hits, possible frame ERROR between 538 and 502, Distance to subject end: 19 aas, your sequence is longer than subject: 348 - 264

Fln protein: MWDIIFALAQSGVCAAFSRETNRKVCFLNISPDEVIRSLFYNKNNESLITVSVYASDNFSSLKCRTTPIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDGIYKVFDLKNYTMLYSISDEQVQEIKISPGIMLLIFERTSGHVPLKILSIEDGTVxxxxxxxxxxxxxxDFIEQFNEKLLVKQENENLQILDVRNSHMTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGVLVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAHPDGSDEEENVGSINMSNILTGKCLAKIRANDPNVRISPRNRPNASAIRSTVQEALEDITALFYT

Protein Length: 349

Fln nts: A_-_ATGTGGGATATTATATTTGCTTTGGCACAGTCTGGTGTTTGTGCAGCATTTAGTAGAGAGACGAATAGAAAAGTTTGCTTCCTGAATATAAGTCCAGATGAAGTGATTCGCAGCCTGTTTTATAACAAGAACAATGAGTCTCTTATCACTGTGTCAGTTTATGCTTCAGATAACTTCAGCTCACTGAAATGCAGAACAACACCGATTGAATACATTAGAAGGGGCAAACCAGATGCAGGTTTTGCTTTATTCGAGTCAGAGTCGTTGAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTAAATGGAAAAGTCCTTACTTATTCTGCTCAAGATGGCATCTACAAAGTTTTTGATTTGAAGAATTATACAATGTTGTACTCAATATCTGATGAACAAGTTCAAGAAATAAAGATAAGTCCAGGCATAATGTTATTAATATTTGAGAGAACTTCTGGTCATGTTCCACTGAAGATCTTATCCATAGAAGATGGTACAGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATTTCATTGAGCAATTCAATGAAAAGCTCCTTGTAAAACAAGAAAACGAGAACCTCCAAATACTAGATGTTCGGAATTCACACATGACTGAAGTGAGCAGGACAGAGTTTATGACACCGTCAGCCTTTATTTTCTTGTATGAGAATCAATTATTTTTAACCTTCCGCAATCGCACTGTTGCTGTTTGGAATTTCCGAGGAGTGCTGGTGACATCTTTTGAAGACCACTTGTTATGGCATCCTGACTGCAATACAAATAACATCTATATCACCAGTGACCAAGATTTGATAATTTCTTATTGCAAGGCCCATCCTGATGGATCTGATGAAGAAGAAAATGTGGGCTCCATAAACATGAGCAACATCTTGACTGGAAAATGTCTTGCTAAGATTCGTGCAAATGATCCAAACGTAAGGATTAGTCCTAGAAATCGGCCAAATGCATCGGCAATCAGAAGCACTGTTCAAGAAGCTCTCGAAGACATTACTGCTCTTTTCTATACATT

Fln Alignment:

Contig10871___SPGIMLLIFERTSGHVPLKILSIEDGTVLxxxxxxxxxxxxVDFIEQFNEKLLVKQENENLQILDVRNSHMTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGVLVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAHPDGSDEEENVGSINMSNILTGKCLAKIRANDPNVRISPRNRPNASAIRSTVQEALEDITALFY
D5A8E8__________________SSGIMLLIFDRASGHVPLKILSIEDGTVLxxxxxxxxxxxxVDFIEQFNEKLLVKQENENLQILDVRNSQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPLSSGAEENVGSINISNILTGKCLAKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain