SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10862

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10862
AATGTATATGCGAACTCTTTGTGATAGCTGTGAAGCAGCGGCGGCGCAGTTTTTTTGTGCAGCAGACGAGGCCGCTCTCTGTGCTAAATGTGATGAAAAGGTTCATGGCTGCAATAAGTTGGCAAGTAGGCATGTAAGGCTGCAACTGAGGGAATCATGGTCTGTACCACGCTGTGACATATGTGAGACTGCAGCAGCTTTTCTACACTGTAGCATTGATGGCTCATCACTATGCCTTCAGTGTGATATGGATGTCCATGTAGGTGGCAAGAGAACCCACGTAAGATATCTATTGCTGGGGCAAAGAGTTGAGCTTCCAAATGGAAATAACATGCAGCTTACAAATGGAAATCACATACGAGATGAACACGGGAATCCTAAAACTATGGAAACAGCAAGAGCTTGGCAGAAAAGTATTGTCAAGAGCACTACCGCAATGGGGATCCTTCTCATAACAACATATCGAATGGTAACATCCATAATGTTGCATCCTGT

Ace file of the UniGene biog3_v1.0_unigene10862 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9372	9/10
SustainPine v2.0	sp_v2.0_unigene61433	1/10

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	79%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, B-box	IPR000315	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP58

Fln msg: STOP codon was not found. Distance to subject end: 13 aas,

Fln protein: MYMRTLCDSCEAAAAQFFCAADEAALCAKCDEKVHGCNKLASRHVRLQLRESWSVPRCDICETAAAFLHCSIDGSSLCLQCDMDVHVGGKRTHVRYLLLGQRVELPNGNNMQLTNGNHIRDEHGNPKTMETARAWQKSIVKSTTAMGILLITTYRMVTSIMLHP

Protein Length: 165

Fln nts: A_-_ATGTATATGCGAACTCTTTGTGATAGCTGTGAAGCAGCGGCGGCGCAGTTTTTTTGTGCAGCAGACGAGGCCGCTCTCTGTGCTAAATGTGATGAAAAGGTTCATGGCTGCAATAAGTTGGCAAGTAGGCATGTAAGGCTGCAACTGAGGGAATCATGGTCTGTACCACGCTGTGACATATGTGAGACTGCAGCAGCTTTTCTACACTGTAGCATTGATGGCTCATCACTATGCCTTCAGTGTGATATGGATGTCCATGTAGGTGGCAAGAGAACCCACGTAAGATATCTATTGCTGGGGCAAAGAGTTGAGCTTCCAAATGGAAATAACATGCAGCTTACAAATGGAAATCACATACGAGATGAACACGGGAATCCTAAAACTATGGAAACAGCAAGAGCTTGGCAGAAAAGTATTGTCAAGAGCACTACCGCAATGGGGATCCTTCTCATAACAACATATCGAATGGTAACATCCATAATGTTGCATCCTGT

Fln Alignment:

Contig10862___MRTLCDSXXXXXXXXXXXXXXXALCAKCDEKVHGCNKLASRHVRLQLRESWSVPRCDICETAAAFLHCSIDGSSLCLQCDMDVHVGGKRTHVRYLLLGQRVELPNGNNMQLTNGNHIRDEHGNPKTMETARAWQKSIVKSTTAMG
B8LP58__________________MRTLCDSCEAAAAQFFCAADEAALCAKCDEKVHGCNKLAGRHVRLQLRESWSAPRCDICETAAAFLHCSIDGSSLCLQCDMEVHVGGKRTHVRYLLLGQRVELPNGNH--IPNGNHIRDEQGNPKTMDTARAWQNKYCQEHRSNG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
189		66		33	0.997452
209	80			20	0.995493
247		85	14		0.993533
326		11	88		0.923564
327	11	88			0.923564
328			88	11	0.923564
410		14		85	0.993533
411	14			14	0.984337
493	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain