SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10856

Length: 1093 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10856

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene489	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	guanylate kinase [Lilium longiflorum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	guanylate kinase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Guanylate kinase.	EC:2.7.4.8	-	0.0	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	70%
Blast2go	Metabolic pathways	01100		0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide metabolic process	GO:0009117	Biological Process	0.0	70%
Blast2go	guanylate kinase activity	GO:0004385	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Peptidase C2, calpain, catalytic domain	IPR001300	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	Guanylate kinase/L-type calcium channel	IPR008145	-	-
Sma3	Guanylate kinase, sub-group	IPR017665	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA64

Fln msg: Distance to subject end: 32 aas,

Fln protein: MGDLQGCFMEDPSSTLANGVYPDSRFSHSATVVGKRIYIFGGDKGGILANDVQILDTLTGKWITPMVLGTKPSPRRGHSALPLNDDRILILGGTSEPKDIWFLEVDTPFVRKQKEVQRKEVVAWSKCAIGGSPQPVVISGPSGVGKGTLISKLMKDFPSTFGFSVSHTTRLPREKEVAGVHYHFTQRGVMEMEVLEGKFLESAHVHGNLYGTSIAAVEAVADAGKRCILDIDVQGARAVKDSTLDALFIFICPPSFEDLEKRLRGRGTEEEDQIQKRLRNAKEELELGRNSMLYI

Protein Length: 296

Fln nts: AATGTAGAGAAATCGTTACTGTGCGAATCCAGAGAGAGACAAGAATGCTTGCAAGGAAAGCGAAACATTGCCAAATCTGCTGCTGTGTGACCATTGTGGTGAATAACGGATCAGTGTATTGTTGAGTACGCGAGCTTGATATTTAACTATCGAATTTAGCAGGGGACCGGTCTGCTTCTGTGGAAGAATTTATTGTCCTGTTGTGATT_-_ATGGGTGATTTGCAAGGTTGTTTTATGGAAGATCCTAGCAGTACTTTGGCCAATGGTGTTTATCCAGACTCTAGATTTTCCCACTCTGCTACTGTTGTTGGGAAAAGAATTTACATATTTGGAGGGGATAAAGGAGGTATCCTGGCTAATGATGTGCAAATTCTTGATACGTTAACTGGCAAATGGATTACTCCAATGGTTTTGGGAACCAAACCATCACCTCGACGGGGCCACTCTGCTTTACCTCTGAACGATGATCGGATATTGATTCTTGGTGGGACTTCTGAACCAAAGGACATCTGGTTTCTAGAGGTTGACACTCCTTTCGTTAGAAAGCAGAAAGAGGTACAAAGGAAGGAAGTTGTAGCTTGGAGCAAGTGTGCCATAGGTGGCAGTCCTCAACCAGTGGTGATTAGTGGACCATCTGGTGTTGGTAAGGGAACCTTGATATCTAAACTCATGAAAGATTTTCCGTCTACTTTTGGGTTCTCTGTAAGTCATACAACACGGCTTCCAAGAGAGAAAGAGGTGGCTGGAGTACATTATCACTTTACCCAACGTGGGGTTATGGAAATGGAAGTCCTGGAAGGAAAATTTCTTGAATCTGCACATGTCCATGGCAATTTGTATGGAACAAGTATTGCAGCCGTGGAGGCAGTGGCTGATGCAGGGAAGAGATGCATTTTGGATATAGATGTTCAGGGGGCTAGGGCTGTGAAGGACAGTACATTAGATGCTCTTTTCATCTTTATCTGTCCACCATCATTTGAAGATCTTGAGAAACGTTTGCGTGGAAGGGGAACAGAAGAAGAGGATCAGATCCAAAAGCGTCTGAGAAATGCAAAGGAAGAGCTTGAGCTTGGGAGAAACTCGATGTTATACATT

Fln Alignment:

Contig10856___SPQP--VVISGPSGVGKGTLISKLMKDFPSTFGFSVSHTTRLPREKEVAGVHYHFTQRGVMEMEVLEGKFLESAHVHGNLYGTSIAAVEAVADAGKRCILDIDVQGA---RAVKDSTLDALFIFICPPSFEDLEKRLRGRGTEEEDQIQKRLRNAKEELE
D5AA64__________________APKPLIIVISGPSGVGKDAVVKRL-QEVRKGIHFVVTATTRAKRLGEVDGKDYFFVSKEHFLSLIEKNELLEYATVYGDYKGIPKQQIRDFMSKGYDIVLRVDVQGAATLRAILGNS--ALFIFLVAESEVALVKRLMDRRTETREKLLLRVSTAREEVK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
136	33			33	0.997753
137	25			75	0.996473
443	25		75		0.996473
444	25	75			0.996473
445		75		25	0.996473
446	75		25		0.996473
447		75		25	0.996473
533	20	80			0.995493
535		80	20		0.995493
624	14			85	0.993533
625		14	85		0.993533
684	25			75	0.996473
687	25	75			0.996473
688			75	25	0.996473
1000	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain