SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10855

Length: 690 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10855 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16675	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinase C1A n=1 Tax=Dactylis glomerata RepID=D0VEB8_DACGL	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	cysteine proteinase	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	74%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
231	33	66			0.997452
232	33	66			0.997452
235		66		33	0.997452
258	66		33		0.997452
399	25			75	0.996473
403		75		25	0.996473
419			80	20	0.995493
420		80	20		0.995493
421		80		20	0.995493
425	20	80			0.995493
493	16		83		0.994512
496	83		16		0.994512
497			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain