SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10852

Length: 877 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10852 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5413	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Lung seven transmembrane receptor [Medicago truncatula]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	transmembrane protein 87b	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transmembrane receptor, eukaryota	IPR009637	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRU5

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 291 - 528

Fln protein: INGRTVWKNPTGYLPGRLAPLLKFYGFLSLAYLILGLIWFLQYVRFGDDILQLQNCITAVISLGMLEMTLWYFEYANFNATGRRPMSITTWAITFMAIKKTVSRLLLLVVSMGYGVVRPTLGGITSKVVLLGAIYFVASEALELVENVGNINDVSGRARTFLVLPVTVLDTFFIVWIFTSLTKTLEKLHARRSFAKLNLYRRFTNSLALAVVLSFALICYELYFRVADPFGEDWQTAWIITAFWNSLSFILLCIICLLWAPSQNATRYAFSEEIGDEFDGEEVIALTSIST

Protein Length: 292

Fln nts: TTATCAATGGCAGAACTGTGTGGAAGAATCCAACAGGCTATTTGCCAGGCAGGTTAGCACCTTTATTGAAATTCTATGGGTTTTTGTCTTTAGCCTACCTTATTCTTGGACTTATCTGGTTTCTGCAATACGTGCGTTTCGGGGATGATATATTACAGCTTCAAAACTGCATAACAGCAGTGATATCCCTTGGAATGCTTGAGATGACCTTGTGGTATTTCGAATATGCCAATTTTAATGCAACTGGGCGTAGACCAATGAGTATCACTACCTGGGCAATCACTTTTATGGCTATTAAGAAGACTGTCTCTCGGCTTCTCCTTCTTGTGGTTTCTATGGGTTATGGTGTGGTGCGACCTACTCTCGGGGGAATTACATCAAAAGTGGTTCTTCTTGGAGCAATCTACTTTGTGGCTTCAGAGGCATTGGAGCTTGTAGAAAATGTTGGGAATATAAATGATGTTTCTGGAAGAGCAAGGACTTTCCTTGTATTACCTGTCACTGTTCTTGATACTTTCTTTATCGTATGGATCTTCACTTCCTTGACAAAAACTTTGGAAAAGCTACATGCACGGAGAAGCTTTGCCAAGCTGAATCTTTATAGAAGGTTTACAAACTCCTTAGCACTAGCTGTGGTCCTCTCTTTTGCTTTGATTTGCTATGAGCTGTATTTCAGGGTAGCAGATCCCTTTGGTGAGGATTGGCAAACTGCTTGGATTATTACAGCTTTCTGGAACTCACTTTCATTCATACTGCTTTGTATAATTTGTTTATTGTGGGCACCATCGCAGAATGCTACCCGGTATGCCTTCTCTGAGGAGATTGGAGACGAATTTGATGGAGAAGAGGTCATTGCCTTAACGAGCATAAGTACATT

Fln Alignment:

Contig10852___INGRTVWKNPTGYLPGRLAPLLKFYGFLSLAYLILGLIWFLQYVRFGDDILQLQNCITAVISLGMLEMTLWYFEYANFNATGRRPMSITTWAITFMAIKKTVSRLLLLVVSMGYGVVRPTLGGITSKVVLLGAIYFVASEALELVENVGNINDVSGRARTFLVLPVTVLDTFFIVWIFTSLTKTLEKLHARRSFAKLNLYRRFTNXXXXXXXXXXXLICYELYFRVADPFGEDWQTAWIITAFWNSLSFXXXXXXXXLWAPSQNATRYAFSEEIGDEFDGEEVIALTS
C0PRU5__________________LDGKTIWKNPTGYLPGRMAPLMTFYGFMSLVYLLLGVIWFSQYIRFWKDVLQLQNCITLVIALGMFEMTLWYFEYANFNATGIRPMGITFWAVTFGAVKKTVARLLLLVVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDVVENVGTIDDLSGNTRLFLVLPVAILDAFLILWIFTSLSKTLEKLQARRRLAKLEIYRKFTNALAVAVIVSVAWIGYELYFKATDPFSERWQSAWIITGFWHMLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDEEEALALTT

SNPs (tot: 5)

Position	A %	C %	T %	Probability
321	25	75		0.996473
324	75		25	0.996473
325	75		25	0.996473
496	25		25	0.995533
580	20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain