SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10845

Length: 1515 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10845

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16659	34/45
SustainPine v2.0	sp_v2.0_unigene27882	11/45

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp\|Q9SRE4.1\|UGAL2_ARATH RecName: Full=UDP-galactose transporter 2; Short=At-UDP-GalT2 gb\|AAF04433.1\|AC010718_2 unknown protein; 11341-9662 [Arabidopsis thaliana] gb\|AAK64150.1\| unknown pro	-	-	56%
FL-Next	sp=UDP-galactose transporter 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	integral membrane protein like	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	74%
Blast2go	GDP-fucose transport	GO:0015783	Biological Process	74%
Blast2go	UDP-glucose transport	GO:0015786	Biological Process	74%
Blast2go	UDP-glucose transmembrane transporter activity	GO:0005460	Molecular Function	74%
Blast2go	GDP-fucose transmembrane transporter activity	GO:0005457	Molecular Function	74%
Blast2go	UDP-galactose transmembrane transporter activity	GO:0005459	Molecular Function	74%
Blast2go	UDP-galactose transmembrane transport	GO:0072334	Biological Process	74%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SRE4

Fln msg:

Fln protein: MASEKKAAVSDIGAWAMNVISSVGIIMANKQVMSRDGYDFRFATTLTAFHFTLTALVGFVSNATGYSAAKEVPLWELLWFSVVANTSIVGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHNKKYTREVKAAVVVVVIGVGVCTVTDVKVNLKGFVCAAVAVLCTSLQQISIGSLQKKYNVGSFELLSKTAPIQAASLLAFGPFADYYLNGRNLLEYKFSSGAILFILLSCILAVFCNLSQYLCIGRFSAVSFQVLGHMKTVCVLILGWLLFDSALTAKNIMGMSVAVIGMIIYSWAVEVAKQATAKSLSMMPVKETDFTEEDVSLLKSGFEINGTKDIELGGATKQ*

Protein Length: 350

Fln nts: TTTTAGATTTATATATTCATGTCTTCATACATTACCCACTTCTAATTTCGAAGGCCAGCCATTTGGAATTAGAGGTCTGCTGGTTTTGTTGAAG_-_ATGGCTTCAGAGAAGAAAGCAGCAGTATCCGACATAGGAGCATGGGCTATGAATGTCATAAGCTCAGTGGGGATTATCATGGCCAATAAGCAAGTCATGTCCAGAGATGGGTATGACTTCAGATTCGCTACAACATTAACTGCTTTCCACTTCACTCTGACTGCATTGGTGGGATTTGTGTCAAATGCTACTGGGTATTCTGCTGCCAAGGAAGTGCCTTTGTGGGAATTGCTCTGGTTCTCTGTTGTTGCCAATACATCTATTGTGGGGATGAACCTGAGTCTCATGTTAAACTCAGTCGGATTTTATCAGATTTCAAAGTTGAGCATGATTCCTGTGGTTTGTGTGATGGAATGGATACTTCACAACAAGAAATATACCAGAGAGGTGAAGGCAGCTGTGGTTGTTGTGGTTATTGGTGTTGGTGTCTGCACCGTCACAGATGTGAAGGTCAATCTCAAAGGGTTTGTCTGTGCTGCGGTGGCTGTGTTATGTACCTCATTGCAACAAATTTCAATTGGCTCCTTACAAAAGAAGTACAATGTTGGCTCTTTTGAACTCCTAAGCAAGACTGCTCCTATACAGGCTGCATCTCTTTTAGCATTTGGCCCTTTTGCAGATTATTATCTAAATGGGCGCAACTTATTAGAATACAAATTTTCATCTGGTGCAATTCTTTTTATACTCCTTTCATGCATTCTAGCCGTGTTCTGCAACCTGAGCCAATATCTCTGCATTGGGCGATTCTCAGCAGTTTCATTTCAGGTTTTGGGCCACATGAAAACTGTTTGTGTCCTTATATTGGGTTGGCTGCTTTTTGATTCAGCATTGACTGCCAAAAATATAATGGGGATGTCTGTTGCTGTTATCGGCATGATAATCTATAGTTGGGCAGTGGAGGTTGCAAAACAAGCCACTGCAAAAAGCTTATCCATGATGCCTGTGAAAGAAACTGATTTTACAGAGGAGGATGTCAGTCTACTAAAGAGTGGATTTGAGATCAATGGTACAAAAGATATTGAACTAGGTGGGGCAACAAAACAATAG___TTTAGTCTTTATGACAATGGCATAGGTGAGACTGATATAAGGAATGCCCCAGCTGTTTCAAGTCACTCTTTCCATCTATGGTTCACGTTGGAGAGCATGGGGGAACAATGATGATAGATGTTTATGAGATAGCTAGATGGTCTTCTTTGATTTTCAAACAGAGTTATAACGGCTACTTGAAGAGTGGCAGCGAGCTTCGTTGATGGTAAATTTTATTTATCTCAGACTATTGGAACAAAGGCCTTCCTCTGGAGTCTGTATATAGTCGAGAGATACAATCTTTTAGTTGCAATGAAATTTATTTTCTGTATTCTGAAGGAAATGCTGCTCATAATGCCCAAAAAGAGAGTAGCTGCTACATTGTACATGTCTAG

Fln Alignment:

Contig10845___KMASEKKAAVSDIGAWAMNVISSVGIIMANKQVMSRDGYDFRXXXXXXXXXXXXXXXVGFVSNATGYSAAKEVPLWELLWFSVVANTSIVGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHNKKYTREXXXXXXXXXXXXXXXXXXXXKVNLKGFVCAAVAVLCTSLQQISIGSLQKKYNVGSFELLSKTAPIQAASLLAFGPFADYYLNGRNLLEYKFSSGAILFILLSCILAVFCNLSQYLCIGRFSAVSFQVLGHMKTVCVLILGWLLFDSALTAKNIMGMSVAVIGMIIYSWAVEVAKQATAKSLSMMPVKETDFTEEDVSLLKSGFEINGTKDIELG
Q9SRE4__________________KPESEKKSAVSDVGAWAMNVISSVGIIMANKQLMSSSGFGFGFATTLTGFHFAFTALVGMVSNATGLSASKHVPLWELLWFSIVANISIAAMNFSLMLNSVGFYQISKLSMIPVVCVLEWILHSKHYCKEVKASVMVVVIGVGICTVTDVKVNAKGFICACTAVFSTSLQQISIGSLQKKYSVGSFELLSKTAPIQAISLLICGPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSEMTFKNIAGMAIAIVGMVIYSWAVDIEKQRNAKS---TPHGKHSMTEDEIKLLKEGVEHIDLKDVELG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
313	25	75			0.996473
314	25	75			0.996473
375		14		85	0.993533
957	14		85		0.993533
958	14			85	0.993533
1041	12		87		0.992554
1042	12			87	0.992554
1049	87		12		0.992554
1119	12		87		0.992554
1120	87	12			0.992554
1122		87		12	0.992554
1145		12	87		0.992554
1146	12			87	0.992554
1166	11		77	11	0.968132
1170	88			11	0.923564
1199		14		14	0.984337
1319	16		83		0.994512
1346	20		80		0.995493
1388			80	20	0.995493
1389			80	20	0.995493
1426	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain