SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10839

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene10839
AATGTCCCCGTTATGCCCGCGGTCTCGTACCCAGTAAAGGTCGCCCCTCTTCCCGAAGACAGAGTTTTCCAGCAGCAGGACGAGCCCCCGACAGAGGAGAGCGGAAAAGAAGGTTTGGGGTCGAAACCGCACATGGAAAGAGAGGCACGAAGGCTTCAAGCCCAGATGTTAAGTCGCGAGGAGGAGATTAATAGACCATTCCCACGGCTAGTACCACCTGCCAAGAAGGAGCCCAAAGTAGAGTATGAATTGAAGGATGCCATTCGGCATGTCAAGGCTAATATCAAATGTAAGTTTGATGAAACTGTGGAAGCACATGTTCTTTTGGGTGTAAATGCAAAGCGAGGGGATCAGATGGTTCGTGGTGGAGCTCCTACTTCCACATGGAATTGGCAAGGCTATTACATT

Ace file of the UniGene biog3_v1.0_unigene10839

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16402	3/6
SustainPine v2.0	sp_v2.0_unigene21663	3/6

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L1 n=1 Tax=Zea mays RepID=B6TB66_MAIZE	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	45%
Blast2go	50s ribosomal protein l1	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Ribosomal protein L1, bacterial-type	IPR005878	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-
Sma3	4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site	IPR018294	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H509

Fln msg: Distance to subject end: 175 aas, your sequence is shorter than subject: 136 - 429

Fln protein: NVPVMPAVSYPVKVAPLPEDRVFQQQDEPPTEESGKEGLGSKPHMEREARRLQAQMLSREEEINRPFPRLVPPAKKEPKVEYELKDAIRHVKANIKCKFDETVEAHVLLGVNAKRGDQMVRGGAPTSTWNWQGYYI

Protein Length: 137

Fln nts: AATGTCCCCGTTATGCCCGCGGTCTCGTACCCAGTAAAGGTCGCCCCTCTTCCCGAAGACAGAGTTTTCCAGCAGCAGGACGAGCCCCCGACAGAGGAGAGCGGAAAAGAAGGTTTGGGGTCGAAACCGCACATGGAAAGAGAGGCACGAAGGCTTCAAGCCCAGATGTTAAGTCGCGAGGAGGAGATTAATAGACCATTCCCACGGCTAGTACCACCTGCCAAGAAGGAGCCCAAAGTAGAGTATGAATTGAAGGATGCCATTCGGCATGTCAAGGCTAATATCAAATGTAAGTTTGATGAAACTGTGGAAGCACATGTTCTTTTGGGTGTAAATGCAAAGCGAGGGGATCAGATGGTTCGTGGTGGAGCTCCTACTTCCACATGGAATTGGCAAGGCTATTACATT

Fln Alignment:

Contig10839___NVPVMPAVSYPVKVAPLPEDRVFQQQDEPPTEESGKEGLGSKPHMEREARRLQAQMLSREEEINRPFPRLVPPAKK-EPKVEYELKDAIRHVKANIKCKFDETVEAHVLLGVNAKRGDQMVRGGA
F6H509__________________DAPSISPVSYPTRVAPLPEDRVTAEAEEEVGKKESEEMEKERIRIEAE-NRIRRRVFRVEEEKAFPFPRLIKVEKKQEQKVILDLMDAIREVKANANRNFDETIEAHVRLGIDRRRSDMTVRGAA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
197			40	60	1.0
238	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain