SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10837

Length: 704 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10837

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11946	16/20
SustainPine v2.0	sp_v2.0_unigene17467	4/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Photosystem I reaction center subunit IV A, chloroplast n=1 Tax=Ricinus communis RepID=B9S592_RICCO	-	-	9.0e-25	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	photosystem i reaction center subunit iv a	-	-	2.35978e-37	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	2.35978e-37	92%
Blast2go	catalytic activity	GO:0003824	Molecular Function	2.35978e-37	92%
Blast2go	photosystem I reaction center	GO:0009538	Cellular Component	2.35978e-37	92%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	2.35978e-37	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaE, reaction centre subunit IV	IPR003375	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
121	10			90	0.90298
122		90		10	0.90298
123		90	10		0.90298
153		11	88		0.923564
155			88	11	0.923564
156		88		11	0.923564
158		87		12	0.992554
159	22	77			0.999999
161		77		22	0.999999
198		85		14	0.993533
249	33		66		0.997452
601		16	83		0.994512
603	83			16	0.994512
604	66	16		16	0.988813
605	20		80		0.995493
621	25			75	0.996473
694	33			66	0.997452
695		33	66		0.997452
697			66	33	0.997452
698			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain