SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10825

Length: 932 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10825

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16212	20/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein [Zea mays] gb\|ABS83244.1\| AN13 [Zea mays] gb\|ACG36018.1\| zinc finger A20 and AN1 domains-containing protein [Zea mays] gb\|ACG48526.1\| zinc finger A20 and AN1 domains-containing protein [Zea mays]	-	-	2.0e-35	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	zinc finger protein	-	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, A20-type	IPR002653	-	0.0	-
Sma3	Zinc finger, AN1-type	IPR000058	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
146	20			80	0.995493
147	20	80			0.995493
239	20			80	0.995493
240	20			80	0.995493
242		80	20		0.995493
268	16		83		0.994512
270			83	16	0.994512
272	83			16	0.994512
273		16	83		0.994512
345	50	50			1.0
474	14	85			0.993533
479	85			14	0.993533
576	85	14			0.993533
579		85		14	0.993533
654	20			80	0.995493
655		20		80	0.995493
656	20		80		0.995493
657	80			20	0.995493
809	25	75			0.996473
810	25	75			0.996473
812		75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
848	859	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain