SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10822

Length: 1332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10822 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16326	31/31

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Picea sitchensis RepID=A9NUJ0_PICSI	-	-	95%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	aspartate aminotransferase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	91%
Blast2go	Cysteine and methionine metabolism	00270	91%
Blast2go	Arginine and proline metabolism	00330	91%
Blast2go	Tyrosine metabolism	00350	91%
Blast2go	Phenylalanine metabolism	00360	91%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	91%
Blast2go	Carbon fixation in photosynthetic organisms	00710	91%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	91%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	91%
Blast2go	Biosynthesis of phenylpropanoids	01061	91%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	91%
Blast2go	Biosynthesis of plant hormones	01070	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	copper ion binding	GO:0005507	Molecular Function	91%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg: Separated hits, possible frame ERROR between 701 and 733, your sequence is shorter than subject: 353 - 431

Fln protein: CKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHxxxxxxxxxxxxPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI*

Protein Length: 354

Fln nts: AATGTAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCTGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAATGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAAATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGGGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATCAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTA

Fln Alignment:

Contig10822___KENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGxxxxxxxxxxxPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI
A9NUJ0__________________KENMEYLPMGGSVKMVEESIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDANVPQRTFHYYHPETRGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHYPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGxxxxxxxxxxxPDLKALWHKEVKVMADRIIGMREALRGNLENLGSPLSWNHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEKELKAGAV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
323	57		42		1.0
371	12	87			0.992554
374	87			12	0.992554
393	12		87		0.992554
722	16			83	0.994512
723	83			16	0.994512
724	83		16		0.994512
725		83		16	0.994512
731	25		75		1.0
733		75		25	1.0
734	75		25		1.0
735	75			25	1.0
819		12	87		0.992554
830	11	88			0.923564
833		88	11		0.923564
908		16	83		0.994512
911	83			16	0.994512
913	16		83		0.994512
914	83			16	0.994512
915	83		16		0.994512
916	83			16	0.994512
954	33		66		1.0
1088	25		75		0.996473
1150	66		33		0.997452
1206		33	66		0.997452
1224	33	66			0.997452
1226		66		33	0.997452
1325	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain