SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10754

Length: 1570 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10754

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15477	124/160
SustainPine v2.0	sp_v2.0_unigene16566	5/160
SustainPine v2.0	sp_v2.0_unigene23519	29/160
SustainPine v2.0	sp_v2.0_unigene78509	1/160

Source	Descriptions	Term	Type	Identity
AutoFact	putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp\|Q9SKJ7.1\|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb\|AAD20711.1\| putative phosphate/phosphoenolpyruvate translocator protein [	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nucleotide-sugar transporter family protein	-	-	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV0

Fln msg:

Fln protein: MGMGSGKGGASVNDNVLKKVVLSYTYVSIWIFLSFSVIVFNKYILDRKMFNWPFPISLTMIHMAFCSFLAIVLVRVLKLVEPIGMSREVYLTSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVSLKRDKFVPNTMANMIGISVGVAIAAYGEAKFDSWGVLLQLGAVAFEATRLVLIQILLTSKGITLNPITTLYYVAPCCLLFLTVPWLFVEFPVLKETSTFHFDYFIFGTNSLCAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSIIKDTVTPINLLGYGLAFLGVCYYNHSKLQALKLKEAQKKSAQADEEAGLLMEQRQERDGENLTGKSDSQA*

Protein Length: 359

Fln nts: CGGGATGCCTGTGCGAGGATACGGTTCTCGTAGGATTCCGCTGATCTGATCGGTCTCTGCTGGGGTTGAAGCCCTTTCTCCCGATCTGATTACTGCAGATCCGCAGTTGGGTGCCACATTTGGGCTCGAAGTTCTATGTTGCGTTGAGATATCAGTGTTTTGCTGATACCCATTTCAGGTTTTTTGCTGCATTAGTGGAAAG_-_ATGGGGATGGGATCAGGCAAGGGCGGCGCTTCTGTGAATGACAATGTCCTGAAAAAGGTCGTGCTGAGCTACACCTATGTGAGCATATGGATCTTCCTGAGCTTCAGTGTGATCGTGTTCAACAAGTACATTCTTGACAGGAAGATGTTTAACTGGCCCTTCCCCATTAGCCTGACCATGATCCACATGGCATTCTGTTCGTTCCTCGCCATAGTGTTGGTGAGAGTCCTGAAACTTGTTGAGCCAATTGGAATGTCAAGGGAGGTCTACCTGACCTCAGTTGTGCCCATCGGAGCCCTCTACTCTCTCAGCCTCTGGTTCTCCAATTCAGCTTACATTTACCTATCAGTCTCCTTTATCCAGATGCTAAAGGCCCTCATGCCCGTGGCTGTCTATTCCATTGGAGTTTCCCTGAAGAGAGATAAATTCGTTCCCAATACCATGGCGAACATGATTGGCATATCAGTTGGAGTCGCCATTGCAGCATACGGGGAGGCCAAGTTCGATTCATGGGGCGTGTTGCTTCAATTGGGTGCAGTTGCGTTTGAGGCTACACGGTTGGTATTGATCCAGATCTTGCTTACGTCAAAGGGAATCACCTTGAATCCCATAACTACCTTGTATTATGTTGCCCCATGCTGCCTTTTGTTTTTGACTGTCCCCTGGTTGTTTGTTGAGTTTCCAGTGCTCAAGGAGACTTCAACCTTCCATTTCGATTATTTCATCTTTGGCACAAACTCCCTCTGTGCCTTTGCCCTTAACCTTGCAGTTTTCCTTTTGATCGGAAAGACTTCAGCTTTGACGATGAACGTGGCTGGTGTTGTCAAGGATTGGCTTCTTATTGCATTCTCATGGTCGATTATCAAGGACACAGTGACACCAATCAATTTGCTAGGCTATGGGCTTGCATTTTTGGGTGTTTGTTACTATAATCATTCCAAATTACAGGCTTTGAAACTGAAGGAGGCCCAAAAGAAGAGTGCTCAAGCAGATGAAGAGGCTGGTTTGCTAATGGAGCAGAGACAGGAGCGGGATGGAGAGAATTTAACAGGGAAGAGTGATTCTCAGGCGTAG___AAGTTTGGTAGCAGTTAAGTAGTTTTTACTCGTAATTTAGTACAATATCCTATGGCTCGAGAAAGCACAGCAAAGGAGATCTATTATGTCAAGGCCTCTTGTAGTTGAATTTGGGTTGAATTTTATTATATTCATTTTTCAGTGCTAGTCAATGCCATGGATGTTCAGAGTTAGGTCTAGATTTGAGATTTTAAGTCAGCAGAGCTGAACCAGAGGAAGATTTGGAATGTCTCATTTGTTACTATTATATCTAGACTGATGTTTTCATTCAAGTCTAAGCATGTTTGTTACATT

Fln Alignment:

Contig10754___ASVNDNVLKKVVLSYTYVSIWIFLSFSVIVFNKYILDRKMFNWPFPISLTMIHMAFCSFLAIVLVRVLKLVEPIGMSREVYLTSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVSLKRDKFVPNTMANMIGISVGVAIAAYGEAKFDSWGVLLQLGAVAFEATRLVLIQILLTSKGITLNPITTLYYVAPCCLLFLTVPWLFVEFPVLKETSTFHFDYFIFGTNSLCAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSIIKDTVTPINLLGYGLAFLGVCYYNHXXXXXXXXXXXXXXXXXXDEEAGLLMEQRQERDGENLTGKSDSQA
B8LQV0__________________ASVNDNVLKKIVLSYTYVSIWIFLSFSVIVFNKYILDRKMYNWPFPISLTMIHMAFCSFLAVLLVRVLKLVEPIGMTREVYLSSVVPIGALYSLSLWFSNSAYIYLSVSFIQMLKALMPVAVYSIGVSLKKETFRSNTMANMIGISVGVAIAAYGEAKFDSWGVLLQLGAVAFEATRLVLIQILLTSKGITLNPITSLYYVAPCCLLFLTVPWLFVEFPVLKESSTFHLDYFIFGTNSVCAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSIIKDTVTPVNLLGYGLAFLGVCYYNHSKLQALKLKEAQKKSAPADEEAGLLMEQRPERDGENLTGKSDAHA

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
88	14		85		0.993533
91			14	85	0.993533
92	85			14	0.993533
95	14		85		0.993533
98			85	14	0.993533
99	85			14	0.993533
143	16		83		0.994512
235	16			83	0.994512
236	16		83		0.994512
239	83			16	0.994512
258	83			16	0.994512
294	85			14	0.993533
339	16		83		0.994512
688		93		6	0.999364
715			86	4	0.999539
847		6		81	0.999943
917	12	87			0.999964
918		12	87		0.999964
1331			86	13	0.999973
1379	11			88	0.923564
1380	88	11			0.923564
1381	11		88		0.923564
1409	14			85	0.993533
1419	20		80		0.995493
1421			80	20	0.995493
1496		10	90		0.90298
1547	20	80			0.995493
1552	25			75	0.996473
1556	33			33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain