SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10743

Length: 878 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10743 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18624	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	tobamovirus multiplication 1 homolog 3 [Solanum lycopersicum]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	tobamovirus multiplication 1 homolog 3	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	viral replication complex formation and maintenance	GO:0046786	Biological Process	0.0	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1084	IPR009457	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAR1

Fln msg: your sequence is shorter than subject: 269 - 293

Fln protein: WDEVDESQKWQDGIYYALCAAYSLVAAVALIQLIRIQLRVPEYGWTTQKIFHFMNVIVNGVRAILFGFHKDIFILRPKVLTVVLLDLPGLVFFSTYTLLVLFWAEIYYQARSLSTDCLRPAYYIINGGIYFIQACIWIYLGVDDNSASEAVAKLFFAVVSLFAALVFLFYGGRLFFMLRRFPIESKGRRKKLNEVGFVTAICFTCFVVRCIVVAVSAFDKNADLDVLDHPILNFIYYMLVEILPSALVLFILRKLPPKRMSNQYHPIH*

Protein Length: 270

Fln nts: TGGGATGAAGTTGATGAATCCCAGAAGTGGCAGGACGGCATTTATTACGCACTCTGTGCTGCTTATTCCCTGGTTGCAGCAGTGGCTCTGATACAACTCATTCGTATTCAATTGCGGGTACCAGAGTATGGGTGGACAACGCAAAAGATTTTTCATTTTATGAATGTTATTGTAAATGGAGTACGCGCTATACTCTTTGGATTTCATAAAGATATATTCATTCTGAGGCCAAAGGTTTTAACAGTTGTTCTGCTAGATCTTCCTGGTCTTGTGTTCTTTTCTACATATACATTACTTGTCTTGTTTTGGGCTGAGATTTATTATCAGGCAAGAAGCCTTTCTACAGATTGTCTTCGGCCTGCGTACTACATAATCAATGGTGGCATATATTTTATACAGGCATGCATCTGGATATACCTTGGGGTAGACGATAACAGTGCATCTGAGGCAGTTGCAAAACTGTTCTTTGCAGTTGTATCACTCTTTGCTGCGCTGGTTTTCTTATTTTATGGTGGAAGGCTTTTCTTTATGCTCAGGCGTTTCCCAATTGAATCAAAAGGCCGGAGAAAGAAACTAAATGAGGTTGGCTTTGTTACAGCTATATGCTTCACTTGCTTTGTCGTAAGGTGCATTGTGGTTGCTGTTTCTGCATTTGACAAGAATGCAGACCTTGATGTTTTGGACCATCCTATTCTTAATTTCATTTACTACATGTTGGTAGAGATTCTTCCATCAGCACTGGTCCTTTTCATCCTCCGAAAGCTACCCCCAAAGCGTATGTCAAATCAGTATCACCCAATTCATTGA___AGATGATAAATCTGACAAACTGCCTTCGGCTGTTAGATCCTTGATCCACCAAGGAGGATAATTGCTACATT

Fln Alignment:

Contig10743___WDEVDESQKWQDGIYYALCAAYSLVAAVALIQLIRIQLRVPEYGWTTQKIFHFMNVIVNGVRAILFGFHKDIFILRPKVLTVVLLDLPGLVFFSTYTLLVLFWAEIYYQARSLSTDCLRPAYYIINGGIYFIQACIWIYLGVDDNSASEAVAKLFFAVVSLFAALVFLFYGGRLFFMLRRFPIESKGRRKKLNEVGFVTAICFTCFVVRCIVVAVSAFDKNADLDVLDHPILNFIYYMLVEILPSALVLFILRKLPPKRMSNQYHPIH
D5AAR1__________________WDEVDESQQWQDGIYYALCAAYSLVAAVALIQLIRIQLRVPEYGWTTQKIFHLMNVIVNGVRAILLGFHRDIFILRPKVLTAILLDLPGLLFFSTYTLLVLFWAEIYYQARSLSTDNLRPAYYIINGGIYFIQACIWIYLGVEDNSASEAVAKLFFAVVSLFAALGFLFYGGRLFFMLRRFPIESKGRRKKLNEVGFVTAICFTCFVIRCIVVALSAFDKDADLDVLDHPILNLIYYMLVEILPSALVLFILRKLPPKRMSDQYHPIH

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
171	33			66	0.997452
172		20	80		0.995493
175			80	20	0.995493
270	33	66			0.997452
271	66	33			0.997452
273			66	33	0.997452
523	20		80		0.995493
524	16	83			0.994512
526			66	33	1.0
527			83	16	0.994512
528		80		20	0.995493
585			83	16	0.994512
586	83		16		0.994512
587		83		16	0.994512
635			80	20	0.995493
636	80			20	0.995493
745	20		80		0.995493
746	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain