SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10740

Length: 1002 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10740 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5925	12/19
SustainPine v2.0	sp_v2.0_unigene6375	7/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Macoilin multi-domain protein	-	-	5.0e-06	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	uncharacterized protein loc100834760	-	-	0.0	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF8

Fln msg: your sequence is shorter than subject: 255 - 454

Fln protein: PLHRKMKYHSVEADTFDHKPASSPSSSVHEISDSIQADTFDHKPASSPSSSVHEISDSIQADTFGHETASSSSLMPERSDLVEASGIQEILNRASGTLDNQMELELREDNYRMLQKVGHNNVREAFELLRDNPAVQRMVMSVASDKAVLDALLKNEKVHEFRRSFQQGEIKLLETSKDSDKSSFHQESPFFRTIENIKTKVMEFTEKTTEVVNQFLGFTDKKILLEKDGDMDRALKASMILFVVLLVTVLVRRV*

Protein Length: 256

Fln nts: ATCCTCTTCACCGCAAGATGAAATATCATTCAGTTGAAGCTGACACCTTTGATCATAAACCGGCATCGTCACCATCCTCTTCAGTTCATGAAATATCCGATTCAATTCAAGCTGACACCTTTGATCATAAACCGGCATCGTCACCATCCTCTTCAGTTCATGAAATATCCGATTCAATTCAAGCTGACACCTTTGGTCATGAAACAGCATCATCTTCCTCTTTAATGCCTGAACGATCTGATTTAGTTGAAGCTTCAGGTATCCAAGAAATTTTGAACAGAGCCTCTGGGACATTAGATAACCAAATGGAGCTAGAATTGCGTGAAGACAATTACAGAATGCTGCAGAAGGTTGGGCACAATAATGTCCGTGAGGCATTCGAGTTGCTAAGAGACAATCCTGCTGTCCAGAGAATGGTCATGTCAGTGGCATCAGATAAAGCTGTCTTGGATGCTTTGCTTAAAAATGAGAAGGTTCATGAATTCAGACGATCATTTCAGCAAGGTGAAATAAAGCTTCTGGAAACTTCCAAGGACTCAGACAAGTCTTCTTTTCATCAGGAGAGTCCTTTCTTTCGGACTATTGAAAATATTAAAACGAAGGTGATGGAATTCACGGAGAAAACGACAGAAGTTGTTAACCAATTTCTTGGATTCACAGACAAGAAAATCCTGTTGGAGAAAGATGGGGACATGGACAGAGCTTTAAAGGCTTCTATGATACTTTTTGTTGTTTTATTAGTGACAGTTCTTGTCAGACGGGTATAA___AAGATATGATATTCTTAGTGAGGATTAGACAGCTGGATTTGGTTATTCTCCCCGTATAATTTTCTTACATAGTGAGGATCTAGACAGTGGGGATTTTGTTATTATGTCAACATTCTGCATTTTAGTGGGATGTCTGTGGCCCTTTTTTATCTTAATATGTTGTGTTTTATTACTTTTTCCCCTTCACACGCTGTTGTGATTTATTCAAGGTGCTATAAAATTGTCTGTTGAACCC

Fln Alignment:

Contig10740___SVEADTFDHKPASSPSSSV--HEISDSIQADTFDHKPASSPSSSVHEISDSIQADTFGHETASSSSLMPERSDLVEASGIQEILNRASGTLDNQMELELREDNYRMLQKVGHNNVREAFELLRDNPAVQRMVMSVASDKAVLDALLKNEKVHEFRRSFQQGEIKLLETSKDSDKSSFHQESPFFRTIENIKTKVMEFTEKTTEVVNQFLGFTDKKILLEKDGDMDRALKASMILF
A9NUF8__________________SVEAGTFDHKSSSSSSSSSPQDEISHSVKADTFDHK-TSSPSSSVHEISDSLEV-TFGHKTASSSSSLPERSDLVEVSSILENWNESRGTLDNQMELELHEDNYRILQKVGHNNVREAFHLLKNNPAVQRMVMSVASDKAVWDALLKNEKVHEFRQSFQQGELKMLETSKDSDKSAFHQENPFFQAIENIKTKVMEFTEKTTDVINQFLGFADKKILLEKDGDMDRALKASLILF

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
296	25			75	0.996473
297	25			75	0.996473
299	75		25		0.996473
300	75			25	0.996473
313	50		50		1.0
358	80			20	0.995493
372	20	80			0.995493
374			20	80	0.995493
375		80		20	0.995493
440	33	66			0.997452
442		66	33		0.997452
600	11	88			0.923564
601	88			11	0.923564
603		88		11	0.923564
676	11		88		0.923564
677		11		88	0.923564
678	12	87			0.992554
704	20			80	0.995493
705		20		80	0.995493
728		25		75	0.996473
785	80			20	0.995493
867		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain