SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10737

Length: 767 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10737 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3229	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gb\|AAC79107.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77784.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82257.1\| Mitochondrial transcription terminat	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mitochondrial transcription termination factor family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	75%
Blast2go	RNA splicing	GO:0008380	Biological Process	75%
Blast2go	rRNA transcription from plastid promoter	GO:0042794	Biological Process	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
410	20		80		0.995493
411	80			20	0.995493
412	80		20		0.995493
422	14			85	0.993533
423	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain