SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10729

Length: 933 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10729

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5017	4/11
SustainPine v2.0	sp_v2.0_unigene33762	4/11
SustainPine v2.0	sp_v2.0_unigene35975	3/11

Source	Descriptions	Term	Type	Identity
AutoFact	DUF659 domain containing protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	uncharacterized protein loc100852591	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	65%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
199		60	40		1.0
204			40	60	1.0
208	40		60		1.0
215		60		40	1.0
230	40		60		1.0
251	60		40		1.0
279		40		60	1.0
291	40	60			1.0
295	16		83		0.994512
296	80			20	0.995493
312		75	25		0.996473
320			75	25	0.996473
325	75		25		0.996473
328	75	25			0.996473
329			75	25	0.996473
338		75		25	0.996473
361		80		20	0.995493
454	75		25		0.996473
468	66			33	0.997452
469		66	33		0.997452
470	66			33	0.997452
686	25			75	0.996473
687	25	75			0.996473
716		75		25	0.996473
724		75		25	0.996473
733	25	75			0.996473
759		66		33	0.997452
789	33	66			0.997452
790		66		33	0.997452
801	66			33	0.997452
826		66		33	0.997452
836	66		33		0.997452
842		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain